Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04800 and LU632_RS04805 are separated by 142 nucleotides LU632_RS04805 and LU632_RS04810 are separated by 497 nucleotides LU632_RS04810 and LU632_RS04815 are separated by 31 nucleotides LU632_RS04815 and LU632_RS04820 are separated by 144 nucleotides
LU632_RS04800: LU632_RS04800 - hypothetical protein, at 941,647 to 941,796
_RS04800
LU632_RS04805: LU632_RS04805 - hypothetical protein, at 941,939 to 942,214
_RS04805
LU632_RS04810: LU632_RS04810 - hypothetical protein, at 942,712 to 942,975
_RS04810
LU632_RS04815: LU632_RS04815 - IS1 family transposase, at 943,007 to 943,111
_RS04815
LU632_RS04820: LU632_RS04820 - IS91 family transposase, at 943,256 to 944,479
_RS04820
Position (kb) 942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 941.722 kb on + strand, within LU632_RS04800 at 941.799 kb on + strand at 941.800 kb on - strand at 941.880 kb on + strand at 941.953 kb on + strand at 942.000 kb on + strand, within LU632_RS04805 at 942.000 kb on + strand, within LU632_RS04805 at 942.027 kb on + strand, within LU632_RS04805 at 942.073 kb on - strand, within LU632_RS04805 at 942.130 kb on + strand, within LU632_RS04805 at 942.145 kb on - strand, within LU632_RS04805 at 942.194 kb on - strand at 942.912 kb on + strand, within LU632_RS04810 at 942.912 kb on + strand, within LU632_RS04810 at 943.094 kb on + strand, within LU632_RS04815 at 943.094 kb on + strand, within LU632_RS04815
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 941,722 + LU632_RS04800 0.50 -3.1 941,799 + -0.9 941,800 - -3.4 941,880 + -2.2 941,953 + +1.5 942,000 + LU632_RS04805 0.22 +1.5 942,000 + LU632_RS04805 0.22 -1.4 942,027 + LU632_RS04805 0.32 -1.6 942,073 - LU632_RS04805 0.49 -0.5 942,130 + LU632_RS04805 0.69 +3.0 942,145 - LU632_RS04805 0.75 +0.1 942,194 - -1.7 942,912 + LU632_RS04810 0.76 -1.0 942,912 + LU632_RS04810 0.76 -3.4 943,094 + LU632_RS04815 0.83 +1.0 943,094 + LU632_RS04815 0.83 -0.0
Or see this region's nucleotide sequence