Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04440 and LU632_RS04445 are separated by 65 nucleotides LU632_RS04445 and LU632_RS04450 are separated by 110 nucleotides LU632_RS04450 and LU632_RS04455 are separated by 2 nucleotides LU632_RS04455 and LU632_RS04460 are separated by 209 nucleotides LU632_RS04460 and LU632_RS04465 overlap by 24 nucleotides
LU632_RS04440: LU632_RS04440 - IS481 family transposase, at 877,256 to 878,296
_RS04440
LU632_RS04445: LU632_RS04445 - hypothetical protein, at 878,362 to 878,622
_RS04445
LU632_RS04450: LU632_RS04450 - SprT-like domain-containing protein, at 878,733 to 879,551
_RS04450
LU632_RS04455: LU632_RS04455 - antirestriction protein ArdR, at 879,554 to 879,787
_RS04455
LU632_RS04460: LU632_RS04460 - hypothetical protein, at 879,997 to 880,455
_RS04460
LU632_RS04465: LU632_RS04465 - helix-turn-helix domain-containing protein, at 880,432 to 880,548
_RS04465
Position (kb) 878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 878.486 kb on - strand, within LU632_RS04445 at 878.486 kb on - strand, within LU632_RS04445 at 878.613 kb on - strand at 878.613 kb on - strand at 878.877 kb on - strand, within LU632_RS04450 at 879.288 kb on - strand, within LU632_RS04450 at 879.288 kb on - strand, within LU632_RS04450 at 879.527 kb on - strand at 879.622 kb on + strand, within LU632_RS04455 at 879.622 kb on + strand, within LU632_RS04455 at 879.625 kb on + strand, within LU632_RS04455 at 879.697 kb on - strand, within LU632_RS04455 at 879.714 kb on - strand, within LU632_RS04455 at 879.715 kb on + strand, within LU632_RS04455 at 879.762 kb on - strand, within LU632_RS04455 at 879.788 kb on - strand at 879.794 kb on - strand at 879.828 kb on - strand at 880.138 kb on + strand, within LU632_RS04460 at 880.234 kb on - strand, within LU632_RS04460 at 880.279 kb on + strand, within LU632_RS04460 at 880.280 kb on - strand, within LU632_RS04460 at 880.340 kb on + strand, within LU632_RS04460 at 880.379 kb on + strand, within LU632_RS04460 at 880.380 kb on - strand, within LU632_RS04460 at 880.409 kb on - strand, within LU632_RS04460 at 880.414 kb on - strand at 880.414 kb on - strand at 880.416 kb on + strand at 880.417 kb on - strand at 880.521 kb on + strand, within LU632_RS04465
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 878,486 - LU632_RS04445 0.48 -0.2 878,486 - LU632_RS04445 0.48 +0.5 878,613 - +0.1 878,613 - +0.1 878,877 - LU632_RS04450 0.18 -2.7 879,288 - LU632_RS04450 0.68 -1.0 879,288 - LU632_RS04450 0.68 -1.1 879,527 - -0.0 879,622 + LU632_RS04455 0.29 +6.1 879,622 + LU632_RS04455 0.29 +0.5 879,625 + LU632_RS04455 0.30 +1.0 879,697 - LU632_RS04455 0.61 -1.3 879,714 - LU632_RS04455 0.68 -2.0 879,715 + LU632_RS04455 0.69 +1.0 879,762 - LU632_RS04455 0.89 -2.4 879,788 - +1.0 879,794 - -0.0 879,828 - +1.2 880,138 + LU632_RS04460 0.31 -0.5 880,234 - LU632_RS04460 0.52 -2.9 880,279 + LU632_RS04460 0.61 +0.4 880,280 - LU632_RS04460 0.62 +0.6 880,340 + LU632_RS04460 0.75 +1.8 880,379 + LU632_RS04460 0.83 +0.6 880,380 - LU632_RS04460 0.83 +0.9 880,409 - LU632_RS04460 0.90 -1.2 880,414 - -0.8 880,414 - -0.0 880,416 + +0.2 880,417 - +0.4 880,521 + LU632_RS04465 0.76 -0.2
Or see this region's nucleotide sequence