Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04290 and LU632_RS04295 are separated by 187 nucleotides LU632_RS04295 and LU632_RS04300 are separated by 44 nucleotides LU632_RS04300 and LU632_RS04305 overlap by 9 nucleotides
LU632_RS04290: LU632_RS04290 - hypothetical protein, at 853,384 to 854,223
_RS04290
LU632_RS04295: LU632_RS04295 - IS91 family transposase, at 854,411 to 854,548
_RS04295
LU632_RS04300: LU632_RS04300 - IS3 family transposase, at 854,593 to 854,838
_RS04300
LU632_RS04305: LU632_RS04305 - DNA primase, at 854,830 to 855,231
_RS04305
Position (kb) 854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 853.743 kb on + strand, within LU632_RS04290 at 853.744 kb on - strand, within LU632_RS04290 at 853.771 kb on + strand, within LU632_RS04290 at 853.772 kb on - strand, within LU632_RS04290 at 854.192 kb on + strand at 854.309 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.424 kb on + strand at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.425 kb on - strand, within LU632_RS04295 at 854.583 kb on + strand at 854.584 kb on - strand at 854.590 kb on + strand at 854.591 kb on - strand at 854.677 kb on - strand, within LU632_RS04300 at 854.723 kb on + strand, within LU632_RS04300 at 854.813 kb on + strand, within LU632_RS04300 at 854.814 kb on - strand at 854.994 kb on + strand, within LU632_RS04305 at 855.244 kb on - strand at 855.244 kb on - strand at 855.434 kb on - strand at 855.488 kb on - strand at 855.551 kb on - strand at 855.596 kb on - strand at 855.598 kb on + strand at 855.657 kb on - strand at 855.689 kb on + strand at 855.757 kb on + strand at 855.760 kb on + strand at 855.760 kb on + strand at 855.761 kb on - strand at 855.838 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 853,743 + LU632_RS04290 0.43 -2.3 853,744 - LU632_RS04290 0.43 +0.1 853,771 + LU632_RS04290 0.46 -0.3 853,772 - LU632_RS04290 0.46 +2.5 854,192 + -1.5 854,309 + -0.5 854,424 + -2.6 854,424 + +1.1 854,424 + -0.0 854,425 - LU632_RS04295 0.10 -1.0 854,425 - LU632_RS04295 0.10 -0.7 854,425 - LU632_RS04295 0.10 -0.8 854,425 - LU632_RS04295 0.10 +1.5 854,425 - LU632_RS04295 0.10 +1.6 854,583 + +0.6 854,584 - -0.1 854,590 + -1.0 854,591 - -1.3 854,677 - LU632_RS04300 0.34 +2.0 854,723 + LU632_RS04300 0.53 -1.8 854,813 + LU632_RS04300 0.89 -0.6 854,814 - -1.3 854,994 + LU632_RS04305 0.41 -2.4 855,244 - -2.0 855,244 - -0.9 855,434 - -0.9 855,488 - -0.2 855,551 - -1.3 855,596 - +8.1 855,598 + -3.0 855,657 - +1.0 855,689 + -0.0 855,757 + +1.0 855,760 + -0.2 855,760 + -2.6 855,761 - -2.2 855,838 + +0.9
Or see this region's nucleotide sequence