Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04190 and LU632_RS04195 are separated by 609 nucleotides LU632_RS04195 and LU632_RS04200 are separated by 941 nucleotides
LU632_RS04190: LU632_RS04190 - hypothetical protein, at 831,756 to 831,893
_RS04190
LU632_RS04195: LU632_RS04195 - hypothetical protein, at 832,503 to 833,861
_RS04195
LU632_RS04200: LU632_RS04200 - AraC family ligand binding domain-containing protein, at 834,803 to 835,315
_RS04200
Position (kb) 832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 831.776 kb on + strand, within LU632_RS04190 at 831.842 kb on + strand, within LU632_RS04190 at 831.924 kb on + strand at 832.058 kb on - strand at 832.104 kb on - strand at 832.107 kb on + strand at 832.207 kb on - strand at 832.207 kb on - strand at 832.268 kb on - strand at 832.479 kb on - strand at 832.479 kb on - strand at 832.548 kb on - strand at 833.007 kb on - strand, within LU632_RS04195 at 833.155 kb on - strand, within LU632_RS04195 at 833.224 kb on + strand, within LU632_RS04195 at 833.363 kb on + strand, within LU632_RS04195 at 833.369 kb on - strand, within LU632_RS04195 at 833.369 kb on - strand, within LU632_RS04195 at 833.522 kb on - strand, within LU632_RS04195 at 833.687 kb on + strand, within LU632_RS04195 at 833.756 kb on + strand at 833.757 kb on - strand at 833.881 kb on + strand at 833.982 kb on - strand at 834.068 kb on + strand at 834.069 kb on - strand at 834.069 kb on - strand at 834.071 kb on - strand at 834.150 kb on + strand at 834.150 kb on + strand at 834.150 kb on + strand at 834.151 kb on - strand at 834.151 kb on - strand at 834.151 kb on - strand at 834.151 kb on - strand at 834.151 kb on - strand at 834.151 kb on - strand at 834.245 kb on + strand at 834.245 kb on + strand at 834.261 kb on + strand at 834.261 kb on + strand at 834.296 kb on - strand at 834.356 kb on + strand at 834.356 kb on + strand at 834.356 kb on + strand at 834.356 kb on + strand at 834.356 kb on + strand at 834.357 kb on - strand at 834.456 kb on - strand at 834.554 kb on + strand at 834.554 kb on + strand at 834.555 kb on - strand at 834.604 kb on - strand at 834.656 kb on + strand at 834.776 kb on + strand at 834.802 kb on + strand at 834.803 kb on - strand at 834.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 831,776 + LU632_RS04190 0.14 -0.3 831,842 + LU632_RS04190 0.62 +0.7 831,924 + +2.4 832,058 - -3.3 832,104 - +0.2 832,107 + -0.4 832,207 - -2.6 832,207 - +0.7 832,268 - +3.1 832,479 - -2.0 832,479 - +1.0 832,548 - +1.4 833,007 - LU632_RS04195 0.37 +2.0 833,155 - LU632_RS04195 0.48 +1.5 833,224 + LU632_RS04195 0.53 -1.0 833,363 + LU632_RS04195 0.63 +1.7 833,369 - LU632_RS04195 0.64 +0.9 833,369 - LU632_RS04195 0.64 +3.1 833,522 - LU632_RS04195 0.75 -0.0 833,687 + LU632_RS04195 0.87 +2.4 833,756 + +0.9 833,757 - -2.0 833,881 + -0.4 833,982 - +1.6 834,068 + -1.8 834,069 - -0.6 834,069 - -2.2 834,071 - +0.3 834,150 + -1.2 834,150 + +1.0 834,150 + +0.7 834,151 - -0.5 834,151 - +1.0 834,151 - +2.3 834,151 - +0.4 834,151 - -0.0 834,151 - -1.6 834,245 + +1.2 834,245 + -3.3 834,261 + +0.4 834,261 + +0.8 834,296 - -1.7 834,356 + +1.0 834,356 + -2.2 834,356 + -1.3 834,356 + -1.6 834,356 + -0.5 834,357 - -0.6 834,456 - -2.9 834,554 + +1.3 834,554 + +0.5 834,555 - -0.2 834,604 - -1.2 834,656 + +0.9 834,776 + -3.1 834,802 + +1.0 834,803 - -1.6 834,803 - -3.5
Or see this region's nucleotide sequence