Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03940 and LU632_RS03945 are separated by 49 nucleotides LU632_RS03945 and LU632_RS03950 are separated by 97 nucleotides LU632_RS03950 and LU632_RS03955 are separated by 502 nucleotides LU632_RS03955 and LU632_RS03960 overlap by 4 nucleotides
LU632_RS03940: LU632_RS03940 - CHC2 zinc finger domain-containing protein, at 790,953 to 793,877
_RS03940
LU632_RS03945: LU632_RS03945 - tyrosine-type recombinase/integrase, at 793,927 to 794,705
_RS03945
LU632_RS03950: LU632_RS03950 - hypothetical protein, at 794,803 to 795,048
_RS03950
LU632_RS03955: LU632_RS03955 - HNH/ENDO VII family nuclease, at 795,551 to 795,832
_RS03955
LU632_RS03960: LU632_RS03960 - SMI1/KNR4 family protein, at 795,829 to 796,260
_RS03960
Position (kb) 794
795
796 Strain fitness (log2 ratio) -1
0
1
2 at 794.888 kb on + strand, within LU632_RS03950 at 794.890 kb on + strand, within LU632_RS03950 at 794.890 kb on + strand, within LU632_RS03950 at 794.890 kb on + strand, within LU632_RS03950 at 795.036 kb on + strand at 795.036 kb on + strand at 795.037 kb on - strand at 795.160 kb on + strand at 795.160 kb on + strand at 795.196 kb on + strand at 795.278 kb on - strand at 795.337 kb on + strand at 795.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 794,888 + LU632_RS03950 0.35 +0.7 794,890 + LU632_RS03950 0.35 -0.6 794,890 + LU632_RS03950 0.35 -0.5 794,890 + LU632_RS03950 0.35 -0.2 795,036 + -0.4 795,036 + -1.7 795,037 - -0.5 795,160 + +2.0 795,160 + -1.0 795,196 + -1.4 795,278 - -1.2 795,337 + -0.0 795,392 - -1.4
Or see this region's nucleotide sequence