Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03535

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03530 and LU632_RS03535 are separated by 118 nucleotidesLU632_RS03535 and LU632_RS03540 are separated by 81 nucleotides LU632_RS03530: LU632_RS03530 - replication endonuclease, at 713,993 to 716,218 _RS03530 LU632_RS03535: LU632_RS03535 - DinI family protein, at 716,337 to 716,777 _RS03535 LU632_RS03540: LU632_RS03540 - hypothetical protein, at 716,859 to 717,590 _RS03540 Position (kb) 716 717Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 715.679 kb on + strand, within LU632_RS03530at 715.713 kb on - strand, within LU632_RS03530at 715.843 kb on + strand, within LU632_RS03530at 715.844 kb on - strand, within LU632_RS03530at 715.884 kb on + strand, within LU632_RS03530at 715.953 kb on + strand, within LU632_RS03530at 715.996 kb on + strandat 715.997 kb on - strandat 715.997 kb on - strandat 715.998 kb on + strandat 715.998 kb on + strandat 716.019 kb on + strandat 716.019 kb on + strandat 716.019 kb on + strandat 716.020 kb on - strandat 716.020 kb on - strandat 716.020 kb on - strandat 716.042 kb on - strandat 716.080 kb on + strandat 716.081 kb on - strandat 716.131 kb on - strandat 716.159 kb on - strandat 716.369 kb on - strandat 716.458 kb on + strand, within LU632_RS03535at 716.459 kb on - strand, within LU632_RS03535at 716.554 kb on + strand, within LU632_RS03535at 716.555 kb on - strand, within LU632_RS03535at 716.566 kb on + strand, within LU632_RS03535at 716.632 kb on + strand, within LU632_RS03535at 716.633 kb on - strand, within LU632_RS03535at 716.633 kb on - strand, within LU632_RS03535at 716.869 kb on + strandat 716.870 kb on - strandat 716.870 kb on - strandat 716.870 kb on - strandat 716.881 kb on + strandat 716.898 kb on - strandat 716.898 kb on - strandat 716.906 kb on + strandat 716.906 kb on + strandat 716.907 kb on - strandat 717.105 kb on - strand, within LU632_RS03540at 717.165 kb on + strand, within LU632_RS03540at 717.166 kb on - strand, within LU632_RS03540at 717.211 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.228 kb on + strand, within LU632_RS03540at 717.248 kb on + strand, within LU632_RS03540at 717.318 kb on - strand, within LU632_RS03540at 717.336 kb on - strand, within LU632_RS03540at 717.341 kb on + strand, within LU632_RS03540at 717.342 kb on - strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.425 kb on + strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.452 kb on + strand, within LU632_RS03540at 717.588 kb on + strandat 717.588 kb on + strandat 717.589 kb on - strandat 717.705 kb on - strandat 717.716 kb on + strandat 717.716 kb on + strandat 717.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
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715,679 + LU632_RS03530 0.76 +2.6
715,713 - LU632_RS03530 0.77 +1.7
715,843 + LU632_RS03530 0.83 +1.6
715,844 - LU632_RS03530 0.83 +1.7
715,884 + LU632_RS03530 0.85 +3.2
715,953 + LU632_RS03530 0.88 +1.5
715,996 + +1.0
715,997 - +1.8
715,997 - -0.8
715,998 + +0.5
715,998 + +1.2
716,019 + -1.3
716,019 + +2.1
716,019 + -1.6
716,020 - -0.1
716,020 - -1.2
716,020 - +0.5
716,042 - -2.3
716,080 + -1.1
716,081 - +0.9
716,131 - -1.0
716,159 - -0.4
716,369 - -1.3
716,458 + LU632_RS03535 0.27 -1.8
716,459 - LU632_RS03535 0.28 -0.2
716,554 + LU632_RS03535 0.49 -1.0
716,555 - LU632_RS03535 0.49 -2.9
716,566 + LU632_RS03535 0.52 -1.6
716,632 + LU632_RS03535 0.67 -2.7
716,633 - LU632_RS03535 0.67 -0.4
716,633 - LU632_RS03535 0.67 -2.9
716,869 + -0.2
716,870 - -1.0
716,870 - +0.4
716,870 - -2.0
716,881 + +0.1
716,898 - -0.4
716,898 - +0.7
716,906 + -0.3
716,906 + -0.0
716,907 - +1.0
717,105 - LU632_RS03540 0.34 +2.3
717,165 + LU632_RS03540 0.42 +0.3
717,166 - LU632_RS03540 0.42 +0.8
717,211 - LU632_RS03540 0.48 -0.5
717,219 - LU632_RS03540 0.49 +1.5
717,219 - LU632_RS03540 0.49 +1.4
717,228 + LU632_RS03540 0.50 +1.0
717,248 + LU632_RS03540 0.53 +1.0
717,318 - LU632_RS03540 0.63 -2.5
717,336 - LU632_RS03540 0.65 +0.4
717,341 + LU632_RS03540 0.66 +0.1
717,342 - LU632_RS03540 0.66 -1.3
717,423 + LU632_RS03540 0.77 -1.8
717,423 + LU632_RS03540 0.77 +0.4
717,425 + LU632_RS03540 0.77 -1.8
717,426 - LU632_RS03540 0.77 +0.7
717,426 - LU632_RS03540 0.77 +0.5
717,426 - LU632_RS03540 0.77 -0.0
717,452 + LU632_RS03540 0.81 -0.5
717,588 + -2.7
717,588 + +0.5
717,589 - +0.0
717,705 - -1.3
717,716 + -1.8
717,716 + -2.9
717,717 - +1.2

Or see this region's nucleotide sequence