Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03485 and LU632_RS03490 are separated by 130 nucleotides LU632_RS03490 and LU632_RS03495 are separated by 30 nucleotides LU632_RS03495 and LU632_RS03500 are separated by 7 nucleotides LU632_RS03500 and LU632_RS03505 overlap by 37 nucleotides LU632_RS03505 and LU632_RS03510 are separated by 67 nucleotides LU632_RS03510 and LU632_RS03515 overlap by 1 nucleotides LU632_RS03515 and LU632_RS03520 are separated by 1 nucleotides
LU632_RS03485: LU632_RS03485 - helix-turn-helix domain-containing protein, at 710,481 to 711,053
_RS03485
LU632_RS03490: LU632_RS03490 - hypothetical protein, at 711,184 to 711,447
_RS03490
LU632_RS03495: LU632_RS03495 - phage regulatory CII family protein, at 711,478 to 711,987
_RS03495
LU632_RS03500: LU632_RS03500 - DUF2724 domain-containing protein, at 711,995 to 712,195
_RS03500
LU632_RS03505: LU632_RS03505 - DUF5347 domain-containing protein, at 712,159 to 712,497
_RS03505
LU632_RS03510: LU632_RS03510 - DUF2732 domain-containing protein, at 712,565 to 712,792
_RS03510
LU632_RS03515: LU632_RS03515 - TraR/DksA family transcriptional regulator, at 712,792 to 713,013
_RS03515
LU632_RS03520: LU632_RS03520 - 3'-5' exonuclease, at 713,015 to 713,722
_RS03520
Position (kb) 711
712
713 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 711.308 kb on + strand, within LU632_RS03490 at 711.367 kb on - strand, within LU632_RS03490 at 711.367 kb on - strand, within LU632_RS03490 at 711.370 kb on + strand, within LU632_RS03490 at 711.512 kb on - strand at 711.597 kb on + strand, within LU632_RS03495 at 711.598 kb on - strand, within LU632_RS03495 at 711.598 kb on - strand, within LU632_RS03495 at 711.760 kb on + strand, within LU632_RS03495 at 711.760 kb on + strand, within LU632_RS03495 at 711.761 kb on - strand, within LU632_RS03495 at 711.761 kb on - strand, within LU632_RS03495 at 711.994 kb on + strand at 711.994 kb on + strand at 711.995 kb on - strand at 712.139 kb on - strand, within LU632_RS03500 at 712.212 kb on + strand, within LU632_RS03505 at 712.228 kb on - strand, within LU632_RS03505 at 712.238 kb on + strand, within LU632_RS03505 at 712.239 kb on - strand, within LU632_RS03505 at 712.239 kb on - strand, within LU632_RS03505 at 712.239 kb on - strand, within LU632_RS03505 at 712.347 kb on + strand, within LU632_RS03505 at 712.395 kb on - strand, within LU632_RS03505 at 712.431 kb on + strand, within LU632_RS03505 at 712.851 kb on - strand, within LU632_RS03515 at 712.851 kb on - strand, within LU632_RS03515 at 712.851 kb on - strand, within LU632_RS03515 at 712.851 kb on - strand, within LU632_RS03515 at 713.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 711,308 + LU632_RS03490 0.47 -0.8 711,367 - LU632_RS03490 0.69 -0.2 711,367 - LU632_RS03490 0.69 -1.8 711,370 + LU632_RS03490 0.70 -2.0 711,512 - -1.3 711,597 + LU632_RS03495 0.23 +0.5 711,598 - LU632_RS03495 0.24 +0.2 711,598 - LU632_RS03495 0.24 +1.0 711,760 + LU632_RS03495 0.55 -1.0 711,760 + LU632_RS03495 0.55 -3.5 711,761 - LU632_RS03495 0.55 +0.2 711,761 - LU632_RS03495 0.55 -2.7 711,994 + -0.9 711,994 + -3.1 711,995 - -0.6 712,139 - LU632_RS03500 0.72 -1.3 712,212 + LU632_RS03505 0.16 +0.7 712,228 - LU632_RS03505 0.20 -0.3 712,238 + LU632_RS03505 0.23 -0.9 712,239 - LU632_RS03505 0.24 -2.0 712,239 - LU632_RS03505 0.24 +0.3 712,239 - LU632_RS03505 0.24 -1.4 712,347 + LU632_RS03505 0.55 -0.3 712,395 - LU632_RS03505 0.70 +1.4 712,431 + LU632_RS03505 0.80 -2.5 712,851 - LU632_RS03515 0.27 +1.0 712,851 - LU632_RS03515 0.27 +2.3 712,851 - LU632_RS03515 0.27 -0.6 712,851 - LU632_RS03515 0.27 -4.1 713,053 - -1.0
Or see this region's nucleotide sequence