Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03440 and LU632_RS03445 are separated by 18 nucleotides LU632_RS03445 and LU632_RS03450 are separated by 103 nucleotides LU632_RS03450 and LU632_RS03455 are separated by 38 nucleotides LU632_RS03455 and LU632_RS03460 are separated by 46 nucleotides
LU632_RS03440: LU632_RS03440 - single-stranded DNA-binding protein, at 703,393 to 703,836
_RS03440
LU632_RS03445: LU632_RS03445 - ProQ/FinO family protein, at 703,855 to 704,322
_RS03445
LU632_RS03450: LU632_RS03450 - hypothetical protein, at 704,426 to 705,979
_RS03450
LU632_RS03455: LU632_RS03455 - hypothetical protein, at 706,018 to 706,497
_RS03455
LU632_RS03460: LU632_RS03460 - IS91 family transposase, at 706,544 to 707,767
_RS03460
Position (kb) 704
705
706 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 703.491 kb on - strand, within LU632_RS03440 at 703.506 kb on + strand, within LU632_RS03440 at 703.653 kb on + strand, within LU632_RS03440 at 703.654 kb on - strand, within LU632_RS03440 at 703.819 kb on + strand at 703.820 kb on - strand at 703.822 kb on + strand at 703.823 kb on - strand at 703.823 kb on - strand at 703.975 kb on - strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.046 kb on - strand, within LU632_RS03445 at 704.046 kb on - strand, within LU632_RS03445 at 704.084 kb on + strand, within LU632_RS03445 at 704.084 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.102 kb on - strand, within LU632_RS03445 at 704.144 kb on - strand, within LU632_RS03445 at 704.176 kb on + strand, within LU632_RS03445 at 704.183 kb on + strand, within LU632_RS03445 at 704.183 kb on + strand, within LU632_RS03445 at 704.447 kb on + strand at 704.448 kb on - strand at 704.522 kb on - strand at 704.562 kb on + strand at 704.566 kb on + strand at 704.640 kb on + strand, within LU632_RS03450 at 704.641 kb on - strand, within LU632_RS03450 at 704.641 kb on - strand, within LU632_RS03450 at 704.857 kb on + strand, within LU632_RS03450 at 704.858 kb on - strand, within LU632_RS03450 at 704.858 kb on - strand, within LU632_RS03450 at 704.953 kb on + strand, within LU632_RS03450 at 705.184 kb on - strand, within LU632_RS03450 at 705.399 kb on + strand, within LU632_RS03450 at 705.399 kb on + strand, within LU632_RS03450 at 705.400 kb on - strand, within LU632_RS03450 at 705.517 kb on + strand, within LU632_RS03450 at 705.684 kb on + strand, within LU632_RS03450 at 705.684 kb on + strand, within LU632_RS03450 at 705.685 kb on - strand, within LU632_RS03450 at 705.721 kb on - strand, within LU632_RS03450 at 705.730 kb on - strand, within LU632_RS03450 at 705.732 kb on + strand, within LU632_RS03450 at 705.748 kb on + strand, within LU632_RS03450 at 705.748 kb on + strand, within LU632_RS03450 at 705.874 kb on + strand at 705.874 kb on + strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.947 kb on - strand at 705.947 kb on - strand at 705.947 kb on - strand at 705.985 kb on + strand at 705.986 kb on - strand at 705.989 kb on - strand at 706.012 kb on - strand at 706.076 kb on - strand, within LU632_RS03455 at 706.076 kb on - strand, within LU632_RS03455 at 706.100 kb on + strand, within LU632_RS03455 at 706.101 kb on - strand, within LU632_RS03455 at 706.116 kb on + strand, within LU632_RS03455 at 706.163 kb on - strand, within LU632_RS03455 at 706.167 kb on + strand, within LU632_RS03455 at 706.177 kb on - strand, within LU632_RS03455 at 706.221 kb on + strand, within LU632_RS03455 at 706.323 kb on - strand, within LU632_RS03455 at 706.351 kb on + strand, within LU632_RS03455 at 706.351 kb on + strand, within LU632_RS03455
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 703,491 - LU632_RS03440 0.22 -0.2 703,506 + LU632_RS03440 0.25 +1.0 703,653 + LU632_RS03440 0.59 -0.0 703,654 - LU632_RS03440 0.59 +2.3 703,819 + -0.6 703,820 - +1.0 703,822 + -1.9 703,823 - +2.1 703,823 - +2.6 703,975 - LU632_RS03445 0.26 -0.6 704,045 + LU632_RS03445 0.41 -0.6 704,045 + LU632_RS03445 0.41 -3.8 704,045 + LU632_RS03445 0.41 -0.0 704,046 - LU632_RS03445 0.41 +1.5 704,046 - LU632_RS03445 0.41 -0.6 704,084 + LU632_RS03445 0.49 -2.0 704,084 + LU632_RS03445 0.49 -0.6 704,101 + LU632_RS03445 0.53 -0.1 704,101 + LU632_RS03445 0.53 -0.6 704,101 + LU632_RS03445 0.53 -0.7 704,101 + LU632_RS03445 0.53 +0.6 704,102 - LU632_RS03445 0.53 +1.6 704,144 - LU632_RS03445 0.62 +1.1 704,176 + LU632_RS03445 0.69 +1.0 704,183 + LU632_RS03445 0.70 +0.7 704,183 + LU632_RS03445 0.70 +3.8 704,447 + -0.5 704,448 - -1.8 704,522 - -0.8 704,562 + -1.0 704,566 + +2.3 704,640 + LU632_RS03450 0.14 -0.8 704,641 - LU632_RS03450 0.14 -0.2 704,641 - LU632_RS03450 0.14 -2.6 704,857 + LU632_RS03450 0.28 -2.5 704,858 - LU632_RS03450 0.28 +0.9 704,858 - LU632_RS03450 0.28 +1.1 704,953 + LU632_RS03450 0.34 -0.6 705,184 - LU632_RS03450 0.49 +0.4 705,399 + LU632_RS03450 0.63 +2.6 705,399 + LU632_RS03450 0.63 +0.9 705,400 - LU632_RS03450 0.63 -3.9 705,517 + LU632_RS03450 0.70 -1.6 705,684 + LU632_RS03450 0.81 +1.3 705,684 + LU632_RS03450 0.81 -3.2 705,685 - LU632_RS03450 0.81 -2.2 705,721 - LU632_RS03450 0.83 -0.6 705,730 - LU632_RS03450 0.84 -3.0 705,732 + LU632_RS03450 0.84 -1.3 705,748 + LU632_RS03450 0.85 -1.7 705,748 + LU632_RS03450 0.85 -0.7 705,874 + -3.3 705,874 + +0.5 705,911 - -1.8 705,911 - -0.5 705,912 + +4.4 705,912 + +0.9 705,946 + +0.7 705,946 + -1.3 705,946 + +0.1 705,946 + -0.6 705,946 + -0.6 705,947 - -3.3 705,947 - +0.4 705,947 - +0.6 705,985 + +1.6 705,986 - -1.3 705,989 - -0.8 706,012 - -3.0 706,076 - LU632_RS03455 0.12 -0.6 706,076 - LU632_RS03455 0.12 -1.2 706,100 + LU632_RS03455 0.17 -2.3 706,101 - LU632_RS03455 0.17 -1.7 706,116 + LU632_RS03455 0.20 +0.4 706,163 - LU632_RS03455 0.30 -1.8 706,167 + LU632_RS03455 0.31 -0.5 706,177 - LU632_RS03455 0.33 -0.6 706,221 + LU632_RS03455 0.42 +0.1 706,323 - LU632_RS03455 0.64 +1.0 706,351 + LU632_RS03455 0.69 -1.8 706,351 + LU632_RS03455 0.69 -1.6
Or see this region's nucleotide sequence