Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03410 and LU632_RS03415 are separated by 8 nucleotides LU632_RS03415 and LU632_RS03420 are separated by 178 nucleotides LU632_RS03420 and LU632_RS03425 are separated by 163 nucleotides LU632_RS03425 and LU632_RS03430 are separated by 201 nucleotides LU632_RS03430 and LU632_RS03435 overlap by 8 nucleotides
LU632_RS03410: LU632_RS03410 - helix-turn-helix domain-containing protein, at 698,336 to 698,536
_RS03410
LU632_RS03415: LU632_RS03415 - hypothetical protein, at 698,545 to 698,988
_RS03415
LU632_RS03420: LU632_RS03420 - hypothetical protein, at 699,167 to 699,355
_RS03420
LU632_RS03425: LU632_RS03425 - hypothetical protein, at 699,519 to 699,755
_RS03425
LU632_RS03430: LU632_RS03430 - DUF4222 domain-containing protein, at 699,957 to 700,199
_RS03430
LU632_RS03435: LU632_RS03435 - TOPRIM and DUF927 domain-containing protein, at 700,192 to 702,996
_RS03435
Position (kb) 699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 698.680 kb on + strand, within LU632_RS03415 at 698.682 kb on + strand, within LU632_RS03415 at 698.683 kb on - strand, within LU632_RS03415 at 698.683 kb on - strand, within LU632_RS03415 at 698.758 kb on + strand, within LU632_RS03415 at 699.045 kb on + strand at 699.045 kb on + strand at 699.045 kb on + strand at 699.090 kb on + strand at 699.140 kb on + strand at 699.484 kb on + strand at 699.521 kb on - strand at 699.546 kb on - strand, within LU632_RS03425 at 699.546 kb on - strand, within LU632_RS03425 at 699.563 kb on - strand, within LU632_RS03425 at 699.566 kb on + strand, within LU632_RS03425 at 699.566 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.623 kb on - strand, within LU632_RS03425 at 699.623 kb on - strand, within LU632_RS03425 at 699.759 kb on + strand at 699.826 kb on - strand at 699.858 kb on - strand at 699.858 kb on - strand at 699.885 kb on + strand at 699.886 kb on - strand at 700.026 kb on - strand, within LU632_RS03430 at 700.067 kb on + strand, within LU632_RS03430 at 700.068 kb on - strand, within LU632_RS03430 at 700.068 kb on - strand, within LU632_RS03430 at 700.068 kb on - strand, within LU632_RS03430 at 700.072 kb on + strand, within LU632_RS03430 at 700.073 kb on - strand, within LU632_RS03430 at 700.073 kb on - strand, within LU632_RS03430 at 700.091 kb on + strand, within LU632_RS03430 at 700.438 kb on - strand at 700.587 kb on + strand, within LU632_RS03435 at 700.587 kb on + strand, within LU632_RS03435 at 700.628 kb on - strand, within LU632_RS03435 at 700.629 kb on + strand, within LU632_RS03435 at 700.630 kb on - strand, within LU632_RS03435 at 700.630 kb on - strand, within LU632_RS03435 at 700.635 kb on - strand, within LU632_RS03435 at 700.714 kb on - strand, within LU632_RS03435 at 700.725 kb on - strand, within LU632_RS03435 at 700.727 kb on + strand, within LU632_RS03435 at 700.727 kb on + strand, within LU632_RS03435 at 700.728 kb on - strand, within LU632_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 698,680 + LU632_RS03415 0.30 +2.1 698,682 + LU632_RS03415 0.31 +2.1 698,683 - LU632_RS03415 0.31 -2.0 698,683 - LU632_RS03415 0.31 +0.1 698,758 + LU632_RS03415 0.48 -2.5 699,045 + -0.2 699,045 + +0.9 699,045 + +0.4 699,090 + -0.6 699,140 + -1.0 699,484 + +1.0 699,521 - -2.9 699,546 - LU632_RS03425 0.11 -0.1 699,546 - LU632_RS03425 0.11 -0.0 699,563 - LU632_RS03425 0.19 -1.8 699,566 + LU632_RS03425 0.20 -2.5 699,566 + LU632_RS03425 0.20 -1.2 699,622 + LU632_RS03425 0.43 +1.0 699,622 + LU632_RS03425 0.43 -2.6 699,622 + LU632_RS03425 0.43 -2.6 699,622 + LU632_RS03425 0.43 +2.8 699,622 + LU632_RS03425 0.43 +1.0 699,622 + LU632_RS03425 0.43 -2.2 699,623 - LU632_RS03425 0.44 +0.6 699,623 - LU632_RS03425 0.44 -1.6 699,759 + -1.3 699,826 - -1.5 699,858 - -0.4 699,858 - -2.7 699,885 + -0.1 699,886 - +3.6 700,026 - LU632_RS03430 0.28 +1.4 700,067 + LU632_RS03430 0.45 -1.0 700,068 - LU632_RS03430 0.46 +0.3 700,068 - LU632_RS03430 0.46 +0.7 700,068 - LU632_RS03430 0.46 -0.5 700,072 + LU632_RS03430 0.47 +5.3 700,073 - LU632_RS03430 0.48 +1.0 700,073 - LU632_RS03430 0.48 -0.0 700,091 + LU632_RS03430 0.55 -1.0 700,438 - -0.5 700,587 + LU632_RS03435 0.14 -0.0 700,587 + LU632_RS03435 0.14 -0.3 700,628 - LU632_RS03435 0.16 -0.2 700,629 + LU632_RS03435 0.16 -3.3 700,630 - LU632_RS03435 0.16 -0.0 700,630 - LU632_RS03435 0.16 -0.9 700,635 - LU632_RS03435 0.16 -0.3 700,714 - LU632_RS03435 0.19 -0.5 700,725 - LU632_RS03435 0.19 +1.0 700,727 + LU632_RS03435 0.19 +0.4 700,727 + LU632_RS03435 0.19 +0.1 700,728 - LU632_RS03435 0.19 -0.0
Or see this region's nucleotide sequence