Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03300 and LU632_RS03305 are separated by 65 nucleotides LU632_RS03305 and LU632_RS03310 overlap by 1 nucleotides
LU632_RS03300: LU632_RS03300 - carbohydrate porin, at 675,963 to 677,525
_RS03300
LU632_RS03305: LU632_RS03305 - sucrose-specific PTS transporter subunit IIBC, at 677,591 to 678,961
_RS03305
LU632_RS03310: LU632_RS03310 - sucrose-6-phosphate hydrolase, at 678,961 to 680,370
_RS03310
Position (kb) 677
678
679 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 676.710 kb on + strand, within LU632_RS03300 at 676.711 kb on - strand, within LU632_RS03300 at 676.755 kb on + strand, within LU632_RS03300 at 676.756 kb on - strand, within LU632_RS03300 at 676.764 kb on - strand, within LU632_RS03300 at 676.806 kb on + strand, within LU632_RS03300 at 676.806 kb on + strand, within LU632_RS03300 at 676.806 kb on + strand, within LU632_RS03300 at 676.807 kb on + strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.847 kb on + strand, within LU632_RS03300 at 676.848 kb on - strand, within LU632_RS03300 at 676.910 kb on + strand, within LU632_RS03300 at 676.910 kb on + strand, within LU632_RS03300 at 676.971 kb on + strand, within LU632_RS03300 at 676.971 kb on + strand, within LU632_RS03300 at 676.972 kb on - strand, within LU632_RS03300 at 677.097 kb on + strand, within LU632_RS03300 at 677.143 kb on + strand, within LU632_RS03300 at 677.187 kb on + strand, within LU632_RS03300 at 677.258 kb on + strand, within LU632_RS03300 at 677.258 kb on + strand, within LU632_RS03300 at 677.258 kb on + strand, within LU632_RS03300 at 677.259 kb on - strand, within LU632_RS03300 at 677.259 kb on - strand, within LU632_RS03300 at 677.262 kb on + strand, within LU632_RS03300 at 677.262 kb on + strand, within LU632_RS03300 at 677.263 kb on - strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.303 kb on + strand, within LU632_RS03300 at 677.325 kb on + strand, within LU632_RS03300 at 677.328 kb on - strand, within LU632_RS03300 at 677.328 kb on - strand, within LU632_RS03300 at 677.365 kb on + strand, within LU632_RS03300 at 677.440 kb on - strand at 677.440 kb on - strand at 677.440 kb on - strand at 677.475 kb on - strand at 677.558 kb on + strand at 677.562 kb on + strand at 677.562 kb on + strand at 677.647 kb on + strand at 677.648 kb on - strand at 677.803 kb on + strand, within LU632_RS03305 at 677.924 kb on - strand, within LU632_RS03305 at 677.938 kb on + strand, within LU632_RS03305 at 678.026 kb on + strand, within LU632_RS03305 at 678.026 kb on + strand, within LU632_RS03305 at 678.027 kb on - strand, within LU632_RS03305 at 678.029 kb on - strand, within LU632_RS03305 at 678.359 kb on - strand, within LU632_RS03305 at 678.418 kb on + strand, within LU632_RS03305 at 678.418 kb on + strand, within LU632_RS03305 at 678.419 kb on - strand, within LU632_RS03305 at 678.489 kb on - strand, within LU632_RS03305 at 678.514 kb on - strand, within LU632_RS03305 at 678.533 kb on - strand, within LU632_RS03305 at 678.729 kb on + strand, within LU632_RS03305 at 678.730 kb on - strand, within LU632_RS03305 at 678.812 kb on + strand, within LU632_RS03305 at 678.813 kb on - strand, within LU632_RS03305 at 678.877 kb on + strand at 678.877 kb on + strand at 678.878 kb on - strand at 678.881 kb on + strand at 678.881 kb on + strand at 678.881 kb on + strand at 678.882 kb on - strand at 678.882 kb on - strand at 678.882 kb on - strand at 678.882 kb on - strand at 678.929 kb on + strand at 678.929 kb on + strand at 678.937 kb on + strand at 678.938 kb on - strand at 678.938 kb on - strand at 679.303 kb on + strand, within LU632_RS03310 at 679.303 kb on + strand, within LU632_RS03310 at 679.304 kb on - strand, within LU632_RS03310 at 679.304 kb on - strand, within LU632_RS03310 at 679.355 kb on + strand, within LU632_RS03310 at 679.383 kb on + strand, within LU632_RS03310 at 679.433 kb on + strand, within LU632_RS03310 at 679.433 kb on + strand, within LU632_RS03310 at 679.433 kb on + strand, within LU632_RS03310 at 679.433 kb on + strand, within LU632_RS03310 at 679.434 kb on - strand, within LU632_RS03310 at 679.434 kb on - strand, within LU632_RS03310 at 679.434 kb on - strand, within LU632_RS03310 at 679.474 kb on - strand, within LU632_RS03310 at 679.479 kb on - strand, within LU632_RS03310 at 679.603 kb on + strand, within LU632_RS03310 at 679.648 kb on + strand, within LU632_RS03310 at 679.746 kb on + strand, within LU632_RS03310 at 679.746 kb on + strand, within LU632_RS03310 at 679.746 kb on + strand, within LU632_RS03310 at 679.747 kb on - strand, within LU632_RS03310 at 679.747 kb on - strand, within LU632_RS03310 at 679.749 kb on + strand, within LU632_RS03310 at 679.749 kb on + strand, within LU632_RS03310 at 679.749 kb on + strand, within LU632_RS03310 at 679.750 kb on - strand, within LU632_RS03310 at 679.750 kb on - strand, within LU632_RS03310 at 679.750 kb on - strand, within LU632_RS03310 at 679.750 kb on - strand, within LU632_RS03310 at 679.753 kb on + strand, within LU632_RS03310 at 679.755 kb on + strand, within LU632_RS03310 at 679.799 kb on - strand, within LU632_RS03310 at 679.957 kb on + strand, within LU632_RS03310 at 679.958 kb on - strand, within LU632_RS03310
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 676,710 + LU632_RS03300 0.48 -3.6 676,711 - LU632_RS03300 0.48 -1.0 676,755 + LU632_RS03300 0.51 -2.4 676,756 - LU632_RS03300 0.51 -1.3 676,764 - LU632_RS03300 0.51 -1.4 676,806 + LU632_RS03300 0.54 -3.2 676,806 + LU632_RS03300 0.54 +0.4 676,806 + LU632_RS03300 0.54 -0.2 676,807 + LU632_RS03300 0.54 -1.2 676,807 - LU632_RS03300 0.54 -1.8 676,807 - LU632_RS03300 0.54 -0.5 676,807 - LU632_RS03300 0.54 -2.8 676,807 - LU632_RS03300 0.54 +0.7 676,847 + LU632_RS03300 0.57 -2.2 676,848 - LU632_RS03300 0.57 -2.9 676,910 + LU632_RS03300 0.61 -1.3 676,910 + LU632_RS03300 0.61 -2.2 676,971 + LU632_RS03300 0.64 -1.1 676,971 + LU632_RS03300 0.64 -0.0 676,972 - LU632_RS03300 0.65 -1.0 677,097 + LU632_RS03300 0.73 -0.0 677,143 + LU632_RS03300 0.75 -1.7 677,187 + LU632_RS03300 0.78 -0.1 677,258 + LU632_RS03300 0.83 -1.0 677,258 + LU632_RS03300 0.83 -0.5 677,258 + LU632_RS03300 0.83 -0.5 677,259 - LU632_RS03300 0.83 -3.0 677,259 - LU632_RS03300 0.83 -0.0 677,262 + LU632_RS03300 0.83 -0.8 677,262 + LU632_RS03300 0.83 -0.5 677,263 - LU632_RS03300 0.83 -2.2 677,268 + LU632_RS03300 0.83 +2.1 677,268 + LU632_RS03300 0.83 +1.0 677,268 + LU632_RS03300 0.83 +0.8 677,268 + LU632_RS03300 0.83 +0.9 677,268 + LU632_RS03300 0.83 -3.3 677,303 + LU632_RS03300 0.86 -4.4 677,325 + LU632_RS03300 0.87 -0.7 677,328 - LU632_RS03300 0.87 -2.5 677,328 - LU632_RS03300 0.87 -2.2 677,365 + LU632_RS03300 0.90 -1.8 677,440 - -0.4 677,440 - +1.0 677,440 - -1.6 677,475 - -2.2 677,558 + -1.0 677,562 + -1.6 677,562 + +0.7 677,647 + -1.0 677,648 - -2.3 677,803 + LU632_RS03305 0.15 -2.5 677,924 - LU632_RS03305 0.24 -1.3 677,938 + LU632_RS03305 0.25 -2.3 678,026 + LU632_RS03305 0.32 -0.5 678,026 + LU632_RS03305 0.32 -0.9 678,027 - LU632_RS03305 0.32 -1.8 678,029 - LU632_RS03305 0.32 -1.6 678,359 - LU632_RS03305 0.56 -2.1 678,418 + LU632_RS03305 0.60 -1.8 678,418 + LU632_RS03305 0.60 -2.0 678,419 - LU632_RS03305 0.60 -3.2 678,489 - LU632_RS03305 0.65 -0.6 678,514 - LU632_RS03305 0.67 -1.5 678,533 - LU632_RS03305 0.69 -2.5 678,729 + LU632_RS03305 0.83 -2.1 678,730 - LU632_RS03305 0.83 -0.7 678,812 + LU632_RS03305 0.89 -0.6 678,813 - LU632_RS03305 0.89 -2.7 678,877 + -3.3 678,877 + -4.0 678,878 - -0.8 678,881 + -2.0 678,881 + -2.7 678,881 + -1.2 678,882 - -0.6 678,882 - +1.7 678,882 - -0.2 678,882 - -0.6 678,929 + -1.6 678,929 + -2.3 678,937 + -1.9 678,938 - -1.0 678,938 - -3.0 679,303 + LU632_RS03310 0.24 -2.5 679,303 + LU632_RS03310 0.24 -5.5 679,304 - LU632_RS03310 0.24 -3.4 679,304 - LU632_RS03310 0.24 -2.8 679,355 + LU632_RS03310 0.28 -2.2 679,383 + LU632_RS03310 0.30 -2.4 679,433 + LU632_RS03310 0.33 -2.2 679,433 + LU632_RS03310 0.33 -2.9 679,433 + LU632_RS03310 0.33 -2.3 679,433 + LU632_RS03310 0.33 -3.8 679,434 - LU632_RS03310 0.34 -4.8 679,434 - LU632_RS03310 0.34 -4.2 679,434 - LU632_RS03310 0.34 -0.0 679,474 - LU632_RS03310 0.36 -1.9 679,479 - LU632_RS03310 0.37 -1.0 679,603 + LU632_RS03310 0.46 -2.7 679,648 + LU632_RS03310 0.49 -4.5 679,746 + LU632_RS03310 0.56 -1.6 679,746 + LU632_RS03310 0.56 -2.6 679,746 + LU632_RS03310 0.56 -2.7 679,747 - LU632_RS03310 0.56 -0.6 679,747 - LU632_RS03310 0.56 -1.0 679,749 + LU632_RS03310 0.56 -2.1 679,749 + LU632_RS03310 0.56 -1.1 679,749 + LU632_RS03310 0.56 -1.0 679,750 - LU632_RS03310 0.56 -3.8 679,750 - LU632_RS03310 0.56 -2.6 679,750 - LU632_RS03310 0.56 -1.8 679,750 - LU632_RS03310 0.56 -3.2 679,753 + LU632_RS03310 0.56 -0.5 679,755 + LU632_RS03310 0.56 -2.7 679,799 - LU632_RS03310 0.59 -1.8 679,957 + LU632_RS03310 0.71 -3.6 679,958 - LU632_RS03310 0.71 -2.6
Or see this region's nucleotide sequence