Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cra and mraZ are separated by 537 nucleotides mraZ and rsmH are separated by 2 nucleotides rsmH and ftsL overlap by 4 nucleotides ftsL and LU632_RS02920 are separated by 8 nucleotides
LU632_RS02900: cra - catabolite repressor/activator, at 591,163 to 592,173
cra
LU632_RS02905: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 592,711 to 593,169
mraZ
LU632_RS02910: rsmH - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 593,172 to 594,113
rsmH
LU632_RS02915: ftsL - cell division protein FtsL, at 594,110 to 594,430
ftsL
LU632_RS02920: LU632_RS02920 - peptidoglycan glycosyltransferase FtsI, at 594,439 to 596,211
_RS02920
Position (kb) 593
594
595 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 592.231 kb on + strand at 592.231 kb on + strand at 592.231 kb on + strand at 592.231 kb on + strand at 592.234 kb on - strand at 592.234 kb on - strand at 592.405 kb on - strand at 592.408 kb on - strand at 592.414 kb on + strand at 592.415 kb on - strand at 592.468 kb on + strand at 592.475 kb on - strand at 592.476 kb on + strand at 592.618 kb on - strand at 592.618 kb on - strand at 592.645 kb on + strand at 592.818 kb on + strand, within mraZ at 592.875 kb on + strand, within mraZ at 593.086 kb on + strand, within mraZ at 593.167 kb on + strand at 593.167 kb on + strand at 593.167 kb on + strand at 593.171 kb on + strand at 593.171 kb on + strand at 593.171 kb on + strand at 593.171 kb on + strand at 593.192 kb on + strand at 593.192 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.250 kb on + strand at 593.387 kb on + strand, within rsmH at 593.393 kb on + strand, within rsmH at 593.393 kb on + strand, within rsmH at 593.612 kb on + strand, within rsmH at 593.627 kb on + strand, within rsmH at 593.660 kb on + strand, within rsmH at 593.660 kb on + strand, within rsmH at 593.660 kb on + strand, within rsmH at 593.798 kb on + strand, within rsmH at 593.798 kb on + strand, within rsmH at 593.827 kb on + strand, within rsmH at 593.878 kb on + strand, within rsmH at 593.927 kb on + strand, within rsmH at 593.989 kb on + strand, within rsmH at 593.989 kb on + strand, within rsmH at 593.989 kb on + strand, within rsmH at 594.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 592,231 + +1.8 592,231 + -2.9 592,231 + -0.1 592,231 + +0.6 592,234 - -0.2 592,234 - -0.3 592,405 - -1.7 592,408 - -0.3 592,414 + -1.7 592,415 - -2.4 592,468 + -2.1 592,475 - +5.2 592,476 + +1.1 592,618 - +1.1 592,618 - -0.8 592,645 + -0.3 592,818 + mraZ LU632_RS02905 0.23 +2.4 592,875 + mraZ LU632_RS02905 0.36 -1.2 593,086 + mraZ LU632_RS02905 0.82 -1.4 593,167 + +0.1 593,167 + -1.2 593,167 + -1.0 593,171 + -1.4 593,171 + -0.3 593,171 + -1.4 593,171 + +0.0 593,192 + -3.9 593,192 + -2.7 593,250 + -2.7 593,250 + -2.1 593,250 + -1.8 593,250 + -3.4 593,250 + -4.5 593,250 + -2.7 593,250 + -2.6 593,250 + +1.1 593,387 + rsmH LU632_RS02910 0.23 -1.7 593,393 + rsmH LU632_RS02910 0.23 -0.4 593,393 + rsmH LU632_RS02910 0.23 -1.2 593,612 + rsmH LU632_RS02910 0.47 -1.2 593,627 + rsmH LU632_RS02910 0.48 -5.1 593,660 + rsmH LU632_RS02910 0.52 -1.8 593,660 + rsmH LU632_RS02910 0.52 -2.5 593,660 + rsmH LU632_RS02910 0.52 -1.9 593,798 + rsmH LU632_RS02910 0.66 -4.6 593,798 + rsmH LU632_RS02910 0.66 -1.4 593,827 + rsmH LU632_RS02910 0.70 +0.9 593,878 + rsmH LU632_RS02910 0.75 -2.7 593,927 + rsmH LU632_RS02910 0.80 -0.4 593,989 + rsmH LU632_RS02910 0.87 -2.9 593,989 + rsmH LU632_RS02910 0.87 -3.0 593,989 + rsmH LU632_RS02910 0.87 +1.1 594,414 + -0.9
Or see this region's nucleotide sequence