Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01960 and LU632_RS01965 are separated by 473 nucleotides LU632_RS01965 and LU632_RS01970 are separated by 127 nucleotides LU632_RS01970 and LU632_RS01975 overlap by 35 nucleotides
LU632_RS01960: LU632_RS01960 - winged helix-turn-helix domain-containing protein, at 375,713 to 376,162
_RS01960
LU632_RS01965: LU632_RS01965 - type 1 fimbrial protein, at 376,636 to 377,217
_RS01965
LU632_RS01970: LU632_RS01970 - molecular chaperone, at 377,345 to 378,064
_RS01970
LU632_RS01975: LU632_RS01975 - fimbrial biogenesis outer membrane usher protein, at 378,030 to 380,648
_RS01975
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1 at 375.984 kb on + strand, within LU632_RS01960 at 376.471 kb on + strand at 376.566 kb on + strand at 376.670 kb on + strand at 376.725 kb on + strand, within LU632_RS01965 at 376.740 kb on + strand, within LU632_RS01965 at 376.762 kb on - strand, within LU632_RS01965 at 376.811 kb on + strand, within LU632_RS01965 at 376.881 kb on + strand, within LU632_RS01965 at 376.986 kb on + strand, within LU632_RS01965 at 376.987 kb on - strand, within LU632_RS01965 at 377.079 kb on - strand, within LU632_RS01965 at 377.143 kb on + strand, within LU632_RS01965 at 377.144 kb on - strand, within LU632_RS01965 at 377.374 kb on + strand at 378.176 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 375,984 + LU632_RS01960 0.60 +1.7 376,471 + -0.4 376,566 + +0.4 376,670 + -1.7 376,725 + LU632_RS01965 0.15 +0.6 376,740 + LU632_RS01965 0.18 +0.9 376,762 - LU632_RS01965 0.22 -0.7 376,811 + LU632_RS01965 0.30 -0.8 376,881 + LU632_RS01965 0.42 -1.6 376,986 + LU632_RS01965 0.60 -0.6 376,987 - LU632_RS01965 0.60 -2.7 377,079 - LU632_RS01965 0.76 -0.0 377,143 + LU632_RS01965 0.87 -0.8 377,144 - LU632_RS01965 0.87 +0.1 377,374 + -1.4 378,176 + +0.5
Or see this region's nucleotide sequence