Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01245 and dcuR overlap by 23 nucleotides dcuR and LU632_RS01255 overlap by 4 nucleotides LU632_RS01255 and LU632_RS01260 overlap by 35 nucleotides LU632_RS01260 and LU632_RS01265 are separated by 174 nucleotides LU632_RS01265 and ulaR are separated by 75 nucleotides
LU632_RS01245: LU632_RS01245 - FAD:protein FMN transferase, at 261,112 to 262,080
_RS01245
LU632_RS01250: dcuR - two-component system response regulator DcuR, at 262,058 to 262,781
dcuR
LU632_RS01255: LU632_RS01255 - ATP-binding protein, at 262,778 to 263,086
_RS01255
LU632_RS01260: LU632_RS01260 - MurR/RpiR family transcriptional regulator, at 263,052 to 263,912
_RS01260
LU632_RS01265: LU632_RS01265 - hypothetical protein, at 264,087 to 264,224
_RS01265
LU632_RS01270: ulaR - HTH-type transcriptional regulator UlaR, at 264,300 to 265,055
ulaR
Position (kb) 263
264 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 262.071 kb on + strand at 262.071 kb on + strand at 262.286 kb on - strand, within dcuR at 262.336 kb on + strand, within dcuR at 262.384 kb on - strand, within dcuR at 262.384 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.489 kb on + strand, within dcuR at 262.490 kb on - strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.609 kb on + strand, within dcuR at 262.610 kb on - strand, within dcuR at 262.626 kb on + strand, within dcuR at 262.626 kb on + strand, within dcuR at 262.627 kb on - strand, within dcuR at 262.692 kb on - strand, within dcuR at 262.764 kb on + strand at 262.764 kb on + strand at 262.764 kb on + strand at 262.764 kb on + strand at 262.765 kb on - strand at 262.767 kb on + strand at 262.776 kb on + strand at 262.777 kb on - strand at 262.777 kb on - strand at 262.814 kb on + strand, within LU632_RS01255 at 262.815 kb on - strand, within LU632_RS01255 at 262.957 kb on + strand, within LU632_RS01255 at 262.957 kb on + strand, within LU632_RS01255 at 262.958 kb on - strand, within LU632_RS01255 at 262.958 kb on - strand, within LU632_RS01255 at 263.080 kb on + strand at 263.080 kb on + strand at 263.294 kb on + strand, within LU632_RS01260 at 263.295 kb on - strand, within LU632_RS01260 at 263.347 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.514 kb on - strand, within LU632_RS01260 at 263.601 kb on - strand, within LU632_RS01260 at 263.621 kb on + strand, within LU632_RS01260 at 263.672 kb on + strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.677 kb on - strand, within LU632_RS01260 at 263.682 kb on + strand, within LU632_RS01260 at 263.715 kb on - strand, within LU632_RS01260 at 263.735 kb on - strand, within LU632_RS01260 at 263.825 kb on + strand, within LU632_RS01260 at 263.967 kb on + strand at 263.975 kb on + strand at 263.976 kb on - strand at 263.977 kb on + strand at 264.037 kb on - strand at 264.056 kb on - strand at 264.060 kb on - strand at 264.060 kb on - strand at 264.100 kb on - strand at 264.127 kb on - strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.253 kb on + strand at 264.255 kb on + strand at 264.268 kb on - strand at 264.268 kb on - strand at 264.354 kb on - strand at 264.354 kb on - strand at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.504 kb on - strand, within ulaR at 264.515 kb on - strand, within ulaR at 264.517 kb on - strand, within ulaR at 264.550 kb on + strand, within ulaR at 264.568 kb on + strand, within ulaR at 264.670 kb on + strand, within ulaR at 264.688 kb on + strand, within ulaR at 264.689 kb on - strand, within ulaR at 264.693 kb on - strand, within ulaR at 264.846 kb on - strand, within ulaR at 264.878 kb on + strand, within ulaR at 264.879 kb on - strand, within ulaR at 264.905 kb on + strand, within ulaR
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 262,071 + -0.6 262,071 + -1.4 262,286 - dcuR LU632_RS01250 0.31 +1.9 262,336 + dcuR LU632_RS01250 0.38 +1.0 262,384 - dcuR LU632_RS01250 0.45 -0.2 262,384 - dcuR LU632_RS01250 0.45 +0.2 262,387 - dcuR LU632_RS01250 0.45 +1.0 262,387 - dcuR LU632_RS01250 0.45 +2.1 262,387 - dcuR LU632_RS01250 0.45 -2.2 262,489 + dcuR LU632_RS01250 0.60 -3.3 262,490 - dcuR LU632_RS01250 0.60 +0.7 262,542 + dcuR LU632_RS01250 0.67 -3.0 262,542 + dcuR LU632_RS01250 0.67 -2.7 262,542 + dcuR LU632_RS01250 0.67 +1.2 262,609 + dcuR LU632_RS01250 0.76 +0.8 262,610 - dcuR LU632_RS01250 0.76 -0.2 262,626 + dcuR LU632_RS01250 0.78 +1.9 262,626 + dcuR LU632_RS01250 0.78 -0.5 262,627 - dcuR LU632_RS01250 0.79 -2.5 262,692 - dcuR LU632_RS01250 0.88 +1.4 262,764 + +2.8 262,764 + -0.2 262,764 + -0.4 262,764 + -1.1 262,765 - +1.9 262,767 + +1.4 262,776 + -0.7 262,777 - +1.0 262,777 - -2.1 262,814 + LU632_RS01255 0.12 -0.9 262,815 - LU632_RS01255 0.12 -0.2 262,957 + LU632_RS01255 0.58 -2.4 262,957 + LU632_RS01255 0.58 -0.7 262,958 - LU632_RS01255 0.58 +2.0 262,958 - LU632_RS01255 0.58 -1.3 263,080 + +1.7 263,080 + -2.6 263,294 + LU632_RS01260 0.28 -3.1 263,295 - LU632_RS01260 0.28 -1.4 263,347 + LU632_RS01260 0.34 -2.1 263,511 + LU632_RS01260 0.53 -3.5 263,511 + LU632_RS01260 0.53 -1.4 263,512 - LU632_RS01260 0.53 -1.8 263,512 - LU632_RS01260 0.53 +1.4 263,513 + LU632_RS01260 0.54 -3.0 263,513 + LU632_RS01260 0.54 +1.9 263,514 - LU632_RS01260 0.54 -0.5 263,601 - LU632_RS01260 0.64 -4.3 263,621 + LU632_RS01260 0.66 +0.1 263,672 + LU632_RS01260 0.72 +1.0 263,673 - LU632_RS01260 0.72 +1.2 263,673 - LU632_RS01260 0.72 +0.4 263,673 - LU632_RS01260 0.72 +0.3 263,677 - LU632_RS01260 0.73 +1.4 263,682 + LU632_RS01260 0.73 -2.5 263,715 - LU632_RS01260 0.77 +0.3 263,735 - LU632_RS01260 0.79 -0.7 263,825 + LU632_RS01260 0.90 -0.8 263,967 + +3.7 263,975 + +1.1 263,976 - +0.7 263,977 + +1.8 264,037 - -0.6 264,056 - +0.9 264,060 - -1.3 264,060 - -0.8 264,100 - -1.0 264,127 - LU632_RS01265 0.29 +1.2 264,147 + LU632_RS01265 0.43 +0.0 264,147 + LU632_RS01265 0.43 +0.9 264,253 + -0.8 264,255 + -0.6 264,268 - +0.7 264,268 - +0.3 264,354 - -1.4 264,354 - -2.5 264,467 - ulaR LU632_RS01270 0.22 -1.6 264,467 - ulaR LU632_RS01270 0.22 -0.8 264,467 - ulaR LU632_RS01270 0.22 +0.3 264,467 - ulaR LU632_RS01270 0.22 -0.0 264,504 - ulaR LU632_RS01270 0.27 -1.6 264,515 - ulaR LU632_RS01270 0.28 -0.4 264,517 - ulaR LU632_RS01270 0.29 +1.2 264,550 + ulaR LU632_RS01270 0.33 +0.6 264,568 + ulaR LU632_RS01270 0.35 -1.4 264,670 + ulaR LU632_RS01270 0.49 -2.0 264,688 + ulaR LU632_RS01270 0.51 -1.1 264,689 - ulaR LU632_RS01270 0.51 +1.2 264,693 - ulaR LU632_RS01270 0.52 -2.8 264,846 - ulaR LU632_RS01270 0.72 -2.4 264,878 + ulaR LU632_RS01270 0.76 -2.5 264,879 - ulaR LU632_RS01270 0.77 -1.6 264,905 + ulaR LU632_RS01270 0.80 -1.6
Or see this region's nucleotide sequence