Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01205

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01195 and LU632_RS01200 are separated by 42 nucleotidesLU632_RS01200 and LU632_RS01205 are separated by 528 nucleotidesLU632_RS01205 and LU632_RS01210 are separated by 54 nucleotides LU632_RS01195: LU632_RS01195 - LysE family translocator, at 252,648 to 252,767 _RS01195 LU632_RS01200: LU632_RS01200 - HNH endonuclease, at 252,810 to 253,175 _RS01200 LU632_RS01205: LU632_RS01205 - class I fumarate hydratase FumA, at 253,704 to 255,350 _RS01205 LU632_RS01210: LU632_RS01210 - anion permease, at 255,405 to 256,841 _RS01210 Position (kb) 253 254 255 256Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 252.719 kb on + strand, within LU632_RS01195at 252.719 kb on + strand, within LU632_RS01195at 252.720 kb on - strand, within LU632_RS01195at 252.726 kb on + strand, within LU632_RS01195at 252.759 kb on - strandat 252.768 kb on + strandat 252.769 kb on - strandat 252.808 kb on - strandat 252.810 kb on - strandat 252.986 kb on - strand, within LU632_RS01200at 253.018 kb on - strand, within LU632_RS01200at 253.018 kb on - strand, within LU632_RS01200at 253.040 kb on + strand, within LU632_RS01200at 253.077 kb on - strand, within LU632_RS01200at 253.077 kb on - strand, within LU632_RS01200at 253.077 kb on - strand, within LU632_RS01200at 253.085 kb on + strand, within LU632_RS01200at 253.086 kb on - strand, within LU632_RS01200at 253.090 kb on - strand, within LU632_RS01200at 253.248 kb on + strandat 253.248 kb on + strandat 253.249 kb on - strandat 253.252 kb on + strandat 253.263 kb on + strandat 253.267 kb on + strandat 253.267 kb on + strandat 253.267 kb on + strandat 253.268 kb on - strandat 253.268 kb on - strandat 253.268 kb on - strandat 253.268 kb on - strandat 253.268 kb on - strandat 253.345 kb on + strandat 253.360 kb on + strandat 253.517 kb on + strandat 253.518 kb on - strandat 253.518 kb on - strandat 253.520 kb on - strandat 253.607 kb on + strandat 253.705 kb on + strandat 253.736 kb on + strandat 253.862 kb on + strandat 253.901 kb on + strand, within LU632_RS01205at 253.901 kb on + strand, within LU632_RS01205at 253.902 kb on - strand, within LU632_RS01205at 253.964 kb on + strand, within LU632_RS01205at 253.974 kb on - strand, within LU632_RS01205at 253.974 kb on - strand, within LU632_RS01205at 253.979 kb on + strand, within LU632_RS01205at 253.979 kb on + strand, within LU632_RS01205at 253.980 kb on - strand, within LU632_RS01205at 254.012 kb on - strand, within LU632_RS01205at 254.089 kb on + strand, within LU632_RS01205at 254.089 kb on + strand, within LU632_RS01205at 254.093 kb on - strand, within LU632_RS01205at 254.113 kb on + strand, within LU632_RS01205at 254.113 kb on + strand, within LU632_RS01205at 254.114 kb on - strand, within LU632_RS01205at 254.114 kb on - strand, within LU632_RS01205at 254.331 kb on - strand, within LU632_RS01205at 254.379 kb on - strand, within LU632_RS01205at 254.382 kb on - strand, within LU632_RS01205at 254.382 kb on - strand, within LU632_RS01205at 254.449 kb on - strand, within LU632_RS01205at 254.583 kb on + strand, within LU632_RS01205at 254.593 kb on + strand, within LU632_RS01205at 254.719 kb on + strand, within LU632_RS01205at 254.765 kb on - strand, within LU632_RS01205at 254.770 kb on + strand, within LU632_RS01205at 254.771 kb on - strand, within LU632_RS01205at 254.816 kb on + strand, within LU632_RS01205at 254.817 kb on - strand, within LU632_RS01205at 254.817 kb on - strand, within LU632_RS01205at 254.818 kb on + strand, within LU632_RS01205at 254.819 kb on - strand, within LU632_RS01205at 254.837 kb on + strand, within LU632_RS01205at 254.887 kb on + strand, within LU632_RS01205at 254.887 kb on + strand, within LU632_RS01205at 254.888 kb on - strand, within LU632_RS01205at 254.888 kb on - strand, within LU632_RS01205at 254.888 kb on - strand, within LU632_RS01205at 254.891 kb on + strand, within LU632_RS01205at 254.892 kb on - strand, within LU632_RS01205at 254.892 kb on - strand, within LU632_RS01205at 254.935 kb on + strand, within LU632_RS01205at 254.935 kb on + strand, within LU632_RS01205at 254.935 kb on + strand, within LU632_RS01205at 254.935 kb on + strand, within LU632_RS01205at 254.936 kb on - strand, within LU632_RS01205at 254.936 kb on - strand, within LU632_RS01205at 254.936 kb on - strand, within LU632_RS01205at 254.945 kb on - strand, within LU632_RS01205at 254.945 kb on - strand, within LU632_RS01205at 255.012 kb on - strand, within LU632_RS01205at 255.087 kb on + strand, within LU632_RS01205at 255.097 kb on + strand, within LU632_RS01205at 255.097 kb on + strand, within LU632_RS01205at 255.098 kb on - strand, within LU632_RS01205at 255.098 kb on - strand, within LU632_RS01205at 255.098 kb on - strand, within LU632_RS01205at 255.170 kb on + strand, within LU632_RS01205at 255.170 kb on + strand, within LU632_RS01205at 255.171 kb on - strand, within LU632_RS01205at 255.287 kb on - strandat 255.290 kb on - strandat 255.341 kb on + strandat 255.342 kb on - strandat 255.473 kb on + strandat 255.474 kb on - strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.523 kb on + strandat 255.524 kb on - strandat 255.524 kb on - strandat 255.524 kb on - strandat 255.524 kb on - strandat 255.524 kb on - strandat 255.524 kb on - strandat 255.524 kb on - strandat 255.525 kb on + strandat 255.525 kb on + strandat 255.525 kb on + strandat 255.525 kb on + strandat 255.526 kb on - strandat 255.526 kb on - strandat 255.528 kb on - strandat 255.528 kb on - strandat 255.528 kb on - strandat 255.555 kb on - strand, within LU632_RS01210at 255.600 kb on + strand, within LU632_RS01210at 255.608 kb on + strand, within LU632_RS01210at 255.645 kb on - strand, within LU632_RS01210at 255.691 kb on + strand, within LU632_RS01210at 255.691 kb on + strand, within LU632_RS01210at 255.692 kb on - strand, within LU632_RS01210at 255.703 kb on + strand, within LU632_RS01210at 255.704 kb on - strand, within LU632_RS01210at 255.747 kb on - strand, within LU632_RS01210at 255.789 kb on - strand, within LU632_RS01210at 255.875 kb on + strand, within LU632_RS01210at 255.875 kb on + strand, within LU632_RS01210at 255.876 kb on - strand, within LU632_RS01210at 255.876 kb on - strand, within LU632_RS01210at 255.912 kb on + strand, within LU632_RS01210at 255.912 kb on + strand, within LU632_RS01210at 255.912 kb on + strand, within LU632_RS01210at 255.913 kb on - strand, within LU632_RS01210at 255.913 kb on - strand, within LU632_RS01210at 255.993 kb on + strand, within LU632_RS01210at 255.993 kb on + strand, within LU632_RS01210at 256.259 kb on + strand, within LU632_RS01210at 256.291 kb on + strand, within LU632_RS01210at 256.291 kb on + strand, within LU632_RS01210

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
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252,719 + LU632_RS01195 0.59 +1.4
252,719 + LU632_RS01195 0.59 +2.4
252,720 - LU632_RS01195 0.60 +0.2
252,726 + LU632_RS01195 0.65 +2.3
252,759 - -0.7
252,768 + -0.9
252,769 - -1.4
252,808 - +0.4
252,810 - -1.1
252,986 - LU632_RS01200 0.48 -1.6
253,018 - LU632_RS01200 0.57 -0.8
253,018 - LU632_RS01200 0.57 -0.2
253,040 + LU632_RS01200 0.63 -2.1
253,077 - LU632_RS01200 0.73 -0.6
253,077 - LU632_RS01200 0.73 +0.0
253,077 - LU632_RS01200 0.73 -1.1
253,085 + LU632_RS01200 0.75 +1.0
253,086 - LU632_RS01200 0.75 +2.2
253,090 - LU632_RS01200 0.77 -2.3
253,248 + +0.5
253,248 + +1.5
253,249 - -0.1
253,252 + +0.6
253,263 + +0.3
253,267 + +2.3
253,267 + -0.4
253,267 + -2.3
253,268 - -0.1
253,268 - +1.2
253,268 - -1.0
253,268 - -2.4
253,268 - -0.2
253,345 + -0.1
253,360 + -0.5
253,517 + -2.2
253,518 - -2.0
253,518 - -2.0
253,520 - -2.0
253,607 + +0.5
253,705 + -0.8
253,736 + -1.8
253,862 + -0.8
253,901 + LU632_RS01205 0.12 -1.0
253,901 + LU632_RS01205 0.12 -1.0
253,902 - LU632_RS01205 0.12 -0.8
253,964 + LU632_RS01205 0.16 +1.3
253,974 - LU632_RS01205 0.16 -1.6
253,974 - LU632_RS01205 0.16 -2.3
253,979 + LU632_RS01205 0.17 -2.1
253,979 + LU632_RS01205 0.17 +1.2
253,980 - LU632_RS01205 0.17 -0.4
254,012 - LU632_RS01205 0.19 -0.5
254,089 + LU632_RS01205 0.23 -3.1
254,089 + LU632_RS01205 0.23 -0.8
254,093 - LU632_RS01205 0.24 +0.7
254,113 + LU632_RS01205 0.25 -1.1
254,113 + LU632_RS01205 0.25 +0.2
254,114 - LU632_RS01205 0.25 -1.7
254,114 - LU632_RS01205 0.25 -1.8
254,331 - LU632_RS01205 0.38 -1.2
254,379 - LU632_RS01205 0.41 -1.8
254,382 - LU632_RS01205 0.41 +2.0
254,382 - LU632_RS01205 0.41 -0.1
254,449 - LU632_RS01205 0.45 +1.0
254,583 + LU632_RS01205 0.53 -0.3
254,593 + LU632_RS01205 0.54 -0.3
254,719 + LU632_RS01205 0.62 +0.7
254,765 - LU632_RS01205 0.64 -2.1
254,770 + LU632_RS01205 0.65 +0.7
254,771 - LU632_RS01205 0.65 +0.2
254,816 + LU632_RS01205 0.68 -0.1
254,817 - LU632_RS01205 0.68 -0.6
254,817 - LU632_RS01205 0.68 -0.5
254,818 + LU632_RS01205 0.68 -0.3
254,819 - LU632_RS01205 0.68 +1.2
254,837 + LU632_RS01205 0.69 -0.4
254,887 + LU632_RS01205 0.72 -0.2
254,887 + LU632_RS01205 0.72 +2.0
254,888 - LU632_RS01205 0.72 -2.6
254,888 - LU632_RS01205 0.72 +3.1
254,888 - LU632_RS01205 0.72 -0.6
254,891 + LU632_RS01205 0.72 -1.6
254,892 - LU632_RS01205 0.72 +1.4
254,892 - LU632_RS01205 0.72 +0.6
254,935 + LU632_RS01205 0.75 +0.9
254,935 + LU632_RS01205 0.75 +0.1
254,935 + LU632_RS01205 0.75 -2.2
254,935 + LU632_RS01205 0.75 -2.1
254,936 - LU632_RS01205 0.75 -0.3
254,936 - LU632_RS01205 0.75 -0.5
254,936 - LU632_RS01205 0.75 -1.6
254,945 - LU632_RS01205 0.75 -0.8
254,945 - LU632_RS01205 0.75 -2.5
255,012 - LU632_RS01205 0.79 +1.2
255,087 + LU632_RS01205 0.84 -2.2
255,097 + LU632_RS01205 0.85 -3.5
255,097 + LU632_RS01205 0.85 -0.3
255,098 - LU632_RS01205 0.85 -0.3
255,098 - LU632_RS01205 0.85 -0.3
255,098 - LU632_RS01205 0.85 -1.8
255,170 + LU632_RS01205 0.89 -1.7
255,170 + LU632_RS01205 0.89 -0.1
255,171 - LU632_RS01205 0.89 +1.2
255,287 - -1.1
255,290 - -0.6
255,341 + +0.2
255,342 - -0.7
255,473 + -2.6
255,474 - +1.7
255,523 + +2.2
255,523 + +0.2
255,523 + -3.8
255,523 + +1.3
255,523 + +0.2
255,523 + +1.5
255,523 + -0.5
255,523 + +1.2
255,523 + +0.2
255,523 + -1.1
255,523 + -1.4
255,524 - -0.7
255,524 - -3.8
255,524 - -1.7
255,524 - +0.3
255,524 - -1.6
255,524 - -1.8
255,524 - +1.1
255,525 + +0.1
255,525 + +0.8
255,525 + -1.2
255,525 + -2.2
255,526 - -1.9
255,526 - +1.7
255,528 - +1.2
255,528 - -1.6
255,528 - +2.6
255,555 - LU632_RS01210 0.10 -0.1
255,600 + LU632_RS01210 0.14 -0.3
255,608 + LU632_RS01210 0.14 +0.2
255,645 - LU632_RS01210 0.17 -0.8
255,691 + LU632_RS01210 0.20 +0.2
255,691 + LU632_RS01210 0.20 -1.6
255,692 - LU632_RS01210 0.20 -1.4
255,703 + LU632_RS01210 0.21 +1.0
255,704 - LU632_RS01210 0.21 -2.3
255,747 - LU632_RS01210 0.24 +1.5
255,789 - LU632_RS01210 0.27 +1.2
255,875 + LU632_RS01210 0.33 -1.2
255,875 + LU632_RS01210 0.33 +1.2
255,876 - LU632_RS01210 0.33 -2.0
255,876 - LU632_RS01210 0.33 +1.3
255,912 + LU632_RS01210 0.35 +0.8
255,912 + LU632_RS01210 0.35 -0.4
255,912 + LU632_RS01210 0.35 -0.1
255,913 - LU632_RS01210 0.35 +0.9
255,913 - LU632_RS01210 0.35 -1.5
255,993 + LU632_RS01210 0.41 -3.0
255,993 + LU632_RS01210 0.41 -1.8
256,259 + LU632_RS01210 0.59 -2.4
256,291 + LU632_RS01210 0.62 +1.2
256,291 + LU632_RS01210 0.62 +2.7

Or see this region's nucleotide sequence