Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt vgrG and LU632_RS00755 are separated by 123 nucleotides LU632_RS00755 and LU632_RS00760 are separated by 62 nucleotides LU632_RS00760 and LU632_RS00765 are separated by 18 nucleotides LU632_RS00765 and LU632_RS00770 are separated by 11 nucleotides
LU632_RS00750: vgrG - type VI secretion system tip protein VgrG, at 160,962 to 163,334
vgrG
LU632_RS00755: LU632_RS00755 - PAAR domain-containing protein, at 163,458 to 163,727
_RS00755
LU632_RS00760: LU632_RS00760 - TagK domain-containing protein, at 163,790 to 164,569
_RS00760
LU632_RS00765: LU632_RS00765 - ImpE family T6SS protein Cts1E, at 164,588 to 165,385
_RS00765
LU632_RS00770: LU632_RS00770 - GPW/gp25 family protein, at 165,397 to 165,888
_RS00770
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 162.860 kb on + strand, within vgrG at 162.896 kb on + strand, within vgrG at 162.897 kb on - strand, within vgrG at 162.897 kb on - strand, within vgrG at 163.340 kb on + strand at 163.457 kb on + strand at 163.457 kb on + strand at 163.457 kb on + strand at 163.458 kb on - strand at 163.513 kb on + strand, within LU632_RS00755 at 163.513 kb on + strand, within LU632_RS00755 at 163.514 kb on - strand, within LU632_RS00755 at 163.567 kb on + strand, within LU632_RS00755 at 163.568 kb on - strand, within LU632_RS00755 at 163.630 kb on + strand, within LU632_RS00755 at 163.635 kb on - strand, within LU632_RS00755 at 163.635 kb on - strand, within LU632_RS00755 at 163.722 kb on - strand at 163.843 kb on + strand at 163.844 kb on - strand at 163.844 kb on - strand at 163.853 kb on - strand at 163.878 kb on - strand, within LU632_RS00760 at 163.882 kb on + strand, within LU632_RS00760 at 163.948 kb on + strand, within LU632_RS00760 at 163.948 kb on + strand, within LU632_RS00760 at 164.076 kb on + strand, within LU632_RS00760 at 164.203 kb on - strand, within LU632_RS00760 at 164.424 kb on - strand, within LU632_RS00760 at 164.608 kb on - strand at 164.718 kb on - strand, within LU632_RS00765 at 164.863 kb on + strand, within LU632_RS00765 at 164.864 kb on - strand, within LU632_RS00765 at 164.907 kb on + strand, within LU632_RS00765 at 165.126 kb on + strand, within LU632_RS00765 at 165.127 kb on - strand, within LU632_RS00765 at 165.203 kb on + strand, within LU632_RS00765 at 165.209 kb on + strand, within LU632_RS00765 at 165.210 kb on - strand, within LU632_RS00765 at 165.550 kb on - strand, within LU632_RS00770 at 165.555 kb on + strand, within LU632_RS00770 at 165.556 kb on - strand, within LU632_RS00770 at 165.558 kb on - strand, within LU632_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 162,860 + vgrG LU632_RS00750 0.80 +0.2 162,896 + vgrG LU632_RS00750 0.82 -1.6 162,897 - vgrG LU632_RS00750 0.82 +1.6 162,897 - vgrG LU632_RS00750 0.82 +1.9 163,340 + -0.9 163,457 + +0.2 163,457 + +0.0 163,457 + -3.1 163,458 - +0.8 163,513 + LU632_RS00755 0.20 +0.8 163,513 + LU632_RS00755 0.20 -2.1 163,514 - LU632_RS00755 0.21 -2.5 163,567 + LU632_RS00755 0.40 -2.4 163,568 - LU632_RS00755 0.41 +0.1 163,630 + LU632_RS00755 0.64 -0.8 163,635 - LU632_RS00755 0.66 -1.5 163,635 - LU632_RS00755 0.66 -0.1 163,722 - -2.0 163,843 + +0.2 163,844 - +2.4 163,844 - -1.2 163,853 - +0.3 163,878 - LU632_RS00760 0.11 -1.3 163,882 + LU632_RS00760 0.12 -1.5 163,948 + LU632_RS00760 0.20 -1.0 163,948 + LU632_RS00760 0.20 -1.1 164,076 + LU632_RS00760 0.37 -3.1 164,203 - LU632_RS00760 0.53 -2.4 164,424 - LU632_RS00760 0.81 +1.2 164,608 - +0.7 164,718 - LU632_RS00765 0.16 -2.9 164,863 + LU632_RS00765 0.34 +0.4 164,864 - LU632_RS00765 0.35 +0.3 164,907 + LU632_RS00765 0.40 -0.2 165,126 + LU632_RS00765 0.67 +2.4 165,127 - LU632_RS00765 0.68 +1.3 165,203 + LU632_RS00765 0.77 -1.2 165,209 + LU632_RS00765 0.78 +1.7 165,210 - LU632_RS00765 0.78 +0.2 165,550 - LU632_RS00770 0.31 -1.1 165,555 + LU632_RS00770 0.32 -1.2 165,556 - LU632_RS00770 0.32 +0.7 165,558 - LU632_RS00770 0.33 +0.6
Or see this region's nucleotide sequence