Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssM and LU632_RS00745 are separated by 51 nucleotides LU632_RS00745 and vgrG are separated by 126 nucleotides
LU632_RS00740: tssM - type VI secretion system membrane subunit TssM, at 156,378 to 160,139
tssM
LU632_RS00745: LU632_RS00745 - hypothetical protein, at 160,191 to 160,835
_RS00745
LU632_RS00750: vgrG - type VI secretion system tip protein VgrG, at 160,962 to 163,334
vgrG
Position (kb) 160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 159.205 kb on + strand, within tssM at 159.285 kb on + strand, within tssM at 159.285 kb on - strand, within tssM at 159.286 kb on - strand, within tssM at 159.287 kb on + strand, within tssM at 159.287 kb on + strand, within tssM at 159.288 kb on - strand, within tssM at 159.288 kb on - strand, within tssM at 159.395 kb on + strand, within tssM at 159.396 kb on - strand, within tssM at 159.399 kb on + strand, within tssM at 159.402 kb on - strand, within tssM at 159.404 kb on + strand, within tssM at 159.416 kb on - strand, within tssM at 159.468 kb on - strand, within tssM at 159.504 kb on - strand, within tssM at 159.539 kb on + strand, within tssM at 159.584 kb on - strand, within tssM at 159.609 kb on - strand, within tssM at 159.752 kb on + strand, within tssM at 159.771 kb on - strand at 159.787 kb on - strand at 159.787 kb on - strand at 159.787 kb on - strand at 159.788 kb on + strand at 159.788 kb on + strand at 159.788 kb on + strand at 159.788 kb on + strand at 159.789 kb on - strand at 159.789 kb on - strand at 159.811 kb on + strand at 159.938 kb on - strand at 160.038 kb on - strand at 160.114 kb on + strand at 160.441 kb on + strand, within LU632_RS00745 at 160.798 kb on - strand at 161.032 kb on + strand at 161.032 kb on + strand at 161.036 kb on + strand at 161.036 kb on + strand at 161.037 kb on - strand at 161.318 kb on - strand, within vgrG at 161.403 kb on + strand, within vgrG at 161.579 kb on + strand, within vgrG at 161.586 kb on + strand, within vgrG at 161.586 kb on + strand, within vgrG at 161.588 kb on + strand, within vgrG at 161.589 kb on - strand, within vgrG at 161.669 kb on + strand, within vgrG at 161.670 kb on - strand, within vgrG at 161.761 kb on - strand, within vgrG
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 159,205 + tssM LU632_RS00740 0.75 +0.3 159,285 + tssM LU632_RS00740 0.77 -1.7 159,285 - tssM LU632_RS00740 0.77 +1.8 159,286 - tssM LU632_RS00740 0.77 +1.5 159,287 + tssM LU632_RS00740 0.77 -3.0 159,287 + tssM LU632_RS00740 0.77 -2.1 159,288 - tssM LU632_RS00740 0.77 +1.0 159,288 - tssM LU632_RS00740 0.77 -1.2 159,395 + tssM LU632_RS00740 0.80 -0.1 159,396 - tssM LU632_RS00740 0.80 -2.3 159,399 + tssM LU632_RS00740 0.80 +2.0 159,402 - tssM LU632_RS00740 0.80 -2.1 159,404 + tssM LU632_RS00740 0.80 +0.8 159,416 - tssM LU632_RS00740 0.81 -0.5 159,468 - tssM LU632_RS00740 0.82 -1.5 159,504 - tssM LU632_RS00740 0.83 -2.0 159,539 + tssM LU632_RS00740 0.84 -0.6 159,584 - tssM LU632_RS00740 0.85 -1.8 159,609 - tssM LU632_RS00740 0.86 +0.2 159,752 + tssM LU632_RS00740 0.90 +1.0 159,771 - +1.6 159,787 - +1.7 159,787 - +2.1 159,787 - -2.0 159,788 + -2.3 159,788 + -0.8 159,788 + +0.8 159,788 + +0.2 159,789 - +0.8 159,789 - -0.5 159,811 + +0.2 159,938 - +0.8 160,038 - +1.0 160,114 + +1.1 160,441 + LU632_RS00745 0.39 -1.8 160,798 - -0.0 161,032 + +0.6 161,032 + -0.0 161,036 + -1.6 161,036 + +1.6 161,037 - +2.9 161,318 - vgrG LU632_RS00750 0.15 -0.4 161,403 + vgrG LU632_RS00750 0.19 +0.9 161,579 + vgrG LU632_RS00750 0.26 +0.8 161,586 + vgrG LU632_RS00750 0.26 +1.5 161,586 + vgrG LU632_RS00750 0.26 -0.8 161,588 + vgrG LU632_RS00750 0.26 -0.2 161,589 - vgrG LU632_RS00750 0.26 -3.0 161,669 + vgrG LU632_RS00750 0.30 +1.5 161,670 - vgrG LU632_RS00750 0.30 +0.6 161,761 - vgrG LU632_RS00750 0.34 -0.4
Or see this region's nucleotide sequence