Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00560

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
116,722	-		LU632_RS00550	0.69	-0.2
116,751	+		LU632_RS00550	0.71	+0.1
116,752	-		LU632_RS00550	0.71	-1.8
116,802	+		LU632_RS00550	0.75	-1.7
116,803	-		LU632_RS00550	0.75	+0.9
116,803	-		LU632_RS00550	0.75	+1.1
116,909	+		LU632_RS00550	0.83	-1.0
116,940	+		LU632_RS00550	0.85	-0.8
116,941	-		LU632_RS00550	0.85	-2.6
116,941	-		LU632_RS00550	0.85	+0.2
117,017	-				-2.3
117,017	-				-0.8
117,124	+				-0.1
117,124	+				-0.4
117,125	-				-0.6
117,125	-				-0.4
117,135	-				-0.8
117,135	-				+2.9
117,171	+				+0.2
117,257	+				-2.8
117,259	+				-0.3
117,293	+				-2.1
117,309	+				-1.3
117,323	-				+0.9
117,334	+				+0.2
117,335	-				-1.8
117,364	+		LU632_RS00555	0.15	-0.4
117,430	+		LU632_RS00555	0.57	+5.1
117,451	+		LU632_RS00555	0.71	+1.1
117,563	+				-1.8
117,563	+				-2.9
117,640	-		LU632_RS00560	0.20	+1.2
117,640	-		LU632_RS00560	0.20	-1.3
117,650	-		LU632_RS00560	0.24	+0.2
117,775	+		LU632_RS00560	0.75	+1.2
117,893	+				+0.6
117,893	+				+0.2
117,894	-				-2.5
117,894	-				-1.1
117,894	-				+1.1
117,894	-				+0.5
117,894	-				-2.6
117,942	+		LU632_RS00565	0.36	-0.3
117,943	-		LU632_RS00565	0.37	+1.0
117,954	+		LU632_RS00565	0.44	+1.0
118,044	+				+0.0
118,044	+				+0.9
118,045	-				+0.8
118,045	-				+0.4
118,045	-				+1.2
118,045	-				-0.8
118,045	-				-0.4
118,045	-				-1.6
118,045	-				-2.1
118,045	-				+0.3
118,046	+				+1.2
118,046	+				+2.2
118,046	+				+2.9
118,046	+				+0.2
118,047	-				-1.8
118,047	-				-1.4
118,047	-				+0.4
118,047	-				+1.2
118,056	+				-3.3
118,074	+				+1.0
118,077	-				+3.2
118,284	-		LU632_RS00570	0.47	-0.7
118,288	+		LU632_RS00570	0.49	-1.6
118,370	+		LU632_RS00570	0.82	-2.3
118,370	+		LU632_RS00570	0.82	+0.2
118,370	+		LU632_RS00570	0.82	-1.1
118,371	-		LU632_RS00570	0.83	+0.5
118,371	-		LU632_RS00570	0.83	-0.1
118,371	-		LU632_RS00570	0.83	-0.4
118,374	+		LU632_RS00570	0.84	-1.1
118,375	-		LU632_RS00570	0.84	+0.4
118,385	+		LU632_RS00570	0.88	-1.6
118,436	+				-1.5
118,438	+				+2.5
118,439	-				-2.6
118,518	-				+2.8
118,558	-				-1.4
118,611	+				+0.1
118,611	+				-0.7
118,679	-				+3.3
118,715	-				+0.2
118,715	-				+1.9
118,736	+				-0.2
118,766	+				-0.6
118,805	+				+3.7
118,825	+				-0.4
118,826	-				+0.8
118,826	-				+2.4