Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00220

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00215 and LU632_RS00220 are separated by 25 nucleotidesLU632_RS00220 and LU632_RS00225 are separated by 299 nucleotidesLU632_RS00225 and LU632_RS00230 are separated by 29 nucleotides LU632_RS00215: LU632_RS00215 - N-acetylmuramoyl-L-alanine amidase, at 41,398 to 42,177 _RS00215 LU632_RS00220: LU632_RS00220 - family 10 glycosylhydrolase, at 42,203 to 43,480 _RS00220 LU632_RS00225: LU632_RS00225 - RcnB family protein, at 43,780 to 44,262 _RS00225 LU632_RS00230: LU632_RS00230 - HD domain-containing protein, at 44,292 to 44,882 _RS00230 Position (kb) 42 43 44Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 41.235 kb on - strandat 41.451 kb on - strandat 41.488 kb on + strand, within LU632_RS00215at 41.489 kb on - strand, within LU632_RS00215at 41.489 kb on - strand, within LU632_RS00215at 41.491 kb on - strand, within LU632_RS00215at 41.552 kb on - strand, within LU632_RS00215at 41.556 kb on + strand, within LU632_RS00215at 41.601 kb on - strand, within LU632_RS00215at 41.642 kb on + strand, within LU632_RS00215at 41.643 kb on - strand, within LU632_RS00215at 41.681 kb on - strand, within LU632_RS00215at 41.723 kb on + strand, within LU632_RS00215at 41.723 kb on + strand, within LU632_RS00215at 41.723 kb on + strand, within LU632_RS00215at 41.723 kb on + strand, within LU632_RS00215at 41.947 kb on + strand, within LU632_RS00215at 42.002 kb on + strand, within LU632_RS00215at 42.007 kb on - strand, within LU632_RS00215at 42.020 kb on - strand, within LU632_RS00215at 42.106 kb on - strandat 42.163 kb on + strandat 42.185 kb on + strandat 42.188 kb on + strandat 42.189 kb on - strandat 42.209 kb on + strandat 42.209 kb on + strandat 42.210 kb on - strandat 42.210 kb on - strandat 42.448 kb on - strand, within LU632_RS00220at 42.585 kb on + strand, within LU632_RS00220at 42.650 kb on - strand, within LU632_RS00220at 42.688 kb on + strand, within LU632_RS00220at 42.688 kb on + strand, within LU632_RS00220at 42.694 kb on - strand, within LU632_RS00220at 42.716 kb on + strand, within LU632_RS00220at 42.860 kb on + strand, within LU632_RS00220at 42.860 kb on + strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.861 kb on - strand, within LU632_RS00220at 42.866 kb on + strand, within LU632_RS00220at 42.867 kb on - strand, within LU632_RS00220at 42.870 kb on - strand, within LU632_RS00220at 42.904 kb on + strand, within LU632_RS00220at 42.905 kb on - strand, within LU632_RS00220at 42.917 kb on + strand, within LU632_RS00220at 42.918 kb on - strand, within LU632_RS00220at 42.970 kb on - strand, within LU632_RS00220at 42.975 kb on + strand, within LU632_RS00220at 43.054 kb on + strand, within LU632_RS00220at 43.055 kb on - strand, within LU632_RS00220at 43.104 kb on - strand, within LU632_RS00220at 43.149 kb on + strand, within LU632_RS00220at 43.157 kb on + strand, within LU632_RS00220at 43.158 kb on - strand, within LU632_RS00220at 43.159 kb on + strand, within LU632_RS00220at 43.175 kb on + strand, within LU632_RS00220at 43.263 kb on - strand, within LU632_RS00220at 43.281 kb on - strand, within LU632_RS00220at 43.335 kb on + strand, within LU632_RS00220at 43.356 kb on + strandat 43.396 kb on - strandat 43.399 kb on - strandat 43.413 kb on - strandat 43.413 kb on - strandat 43.413 kb on - strandat 43.417 kb on - strandat 43.468 kb on + strandat 43.518 kb on + strandat 43.518 kb on + strandat 43.518 kb on + strandat 43.518 kb on + strandat 43.519 kb on - strandat 43.519 kb on - strandat 43.561 kb on + strandat 43.703 kb on + strandat 43.785 kb on + strandat 43.786 kb on - strandat 43.795 kb on + strandat 43.795 kb on + strandat 43.796 kb on - strandat 43.796 kb on - strandat 43.817 kb on + strandat 43.818 kb on - strandat 44.029 kb on + strand, within LU632_RS00225at 44.037 kb on - strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.173 kb on + strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.174 kb on - strand, within LU632_RS00225at 44.175 kb on + strand, within LU632_RS00225at 44.175 kb on + strand, within LU632_RS00225at 44.188 kb on + strand, within LU632_RS00225at 44.188 kb on + strand, within LU632_RS00225at 44.188 kb on + strand, within LU632_RS00225at 44.189 kb on - strand, within LU632_RS00225at 44.197 kb on + strand, within LU632_RS00225at 44.249 kb on - strandat 44.249 kb on - strandat 44.250 kb on + strandat 44.251 kb on - strandat 44.414 kb on + strand, within LU632_RS00230at 44.414 kb on + strand, within LU632_RS00230at 44.414 kb on + strand, within LU632_RS00230at 44.415 kb on - strand, within LU632_RS00230at 44.440 kb on - strand, within LU632_RS00230

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
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41,235 - +1.5
41,451 - -0.4
41,488 + LU632_RS00215 0.12 -2.0
41,489 - LU632_RS00215 0.12 -0.1
41,489 - LU632_RS00215 0.12 -0.8
41,491 - LU632_RS00215 0.12 +1.3
41,552 - LU632_RS00215 0.20 +0.7
41,556 + LU632_RS00215 0.20 +0.9
41,601 - LU632_RS00215 0.26 +0.6
41,642 + LU632_RS00215 0.31 -2.5
41,643 - LU632_RS00215 0.31 -0.9
41,681 - LU632_RS00215 0.36 +0.5
41,723 + LU632_RS00215 0.42 +0.2
41,723 + LU632_RS00215 0.42 -0.4
41,723 + LU632_RS00215 0.42 +1.6
41,723 + LU632_RS00215 0.42 +2.5
41,947 + LU632_RS00215 0.70 +2.2
42,002 + LU632_RS00215 0.77 -0.2
42,007 - LU632_RS00215 0.78 +0.3
42,020 - LU632_RS00215 0.80 -1.5
42,106 - -0.0
42,163 + +0.9
42,185 + -1.8
42,188 + -2.3
42,189 - -0.4
42,209 + -0.8
42,209 + -2.6
42,210 - -3.1
42,210 - -1.5
42,448 - LU632_RS00220 0.19 -2.1
42,585 + LU632_RS00220 0.30 -2.5
42,650 - LU632_RS00220 0.35 +0.2
42,688 + LU632_RS00220 0.38 -1.8
42,688 + LU632_RS00220 0.38 -1.8
42,694 - LU632_RS00220 0.38 -1.8
42,716 + LU632_RS00220 0.40 +4.1
42,860 + LU632_RS00220 0.51 +0.2
42,860 + LU632_RS00220 0.51 -1.3
42,861 - LU632_RS00220 0.51 +1.2
42,861 - LU632_RS00220 0.51 -2.1
42,861 - LU632_RS00220 0.51 -0.4
42,861 - LU632_RS00220 0.51 +2.6
42,861 - LU632_RS00220 0.51 -2.7
42,861 - LU632_RS00220 0.51 -2.5
42,866 + LU632_RS00220 0.52 -1.9
42,867 - LU632_RS00220 0.52 -3.3
42,870 - LU632_RS00220 0.52 -3.7
42,904 + LU632_RS00220 0.55 -3.7
42,905 - LU632_RS00220 0.55 +1.4
42,917 + LU632_RS00220 0.56 -0.2
42,918 - LU632_RS00220 0.56 -2.0
42,970 - LU632_RS00220 0.60 -2.8
42,975 + LU632_RS00220 0.60 -1.7
43,054 + LU632_RS00220 0.67 -1.8
43,055 - LU632_RS00220 0.67 -2.1
43,104 - LU632_RS00220 0.71 -1.1
43,149 + LU632_RS00220 0.74 -1.1
43,157 + LU632_RS00220 0.75 -1.7
43,158 - LU632_RS00220 0.75 -3.5
43,159 + LU632_RS00220 0.75 -1.0
43,175 + LU632_RS00220 0.76 -2.2
43,263 - LU632_RS00220 0.83 -2.4
43,281 - LU632_RS00220 0.84 -0.4
43,335 + LU632_RS00220 0.89 +0.6
43,356 + +0.3
43,396 - -0.7
43,399 - -1.6
43,413 - -4.1
43,413 - -1.8
43,413 - -1.6
43,417 - +0.2
43,468 + -3.1
43,518 + -0.3
43,518 + -0.3
43,518 + +3.4
43,518 + -0.6
43,519 - -2.4
43,519 - +0.6
43,561 + -1.5
43,703 + -1.5
43,785 + -3.5
43,786 - +0.1
43,795 + -0.4
43,795 + -0.4
43,796 - -0.5
43,796 - +1.5
43,817 + -1.8
43,818 - +1.6
44,029 + LU632_RS00225 0.52 -0.1
44,037 - LU632_RS00225 0.53 -0.3
44,173 + LU632_RS00225 0.81 +3.0
44,173 + LU632_RS00225 0.81 +1.2
44,173 + LU632_RS00225 0.81 -1.6
44,173 + LU632_RS00225 0.81 -1.6
44,174 - LU632_RS00225 0.82 +0.0
44,174 - LU632_RS00225 0.82 +0.6
44,174 - LU632_RS00225 0.82 +0.2
44,174 - LU632_RS00225 0.82 -1.8
44,174 - LU632_RS00225 0.82 -0.0
44,175 + LU632_RS00225 0.82 -0.5
44,175 + LU632_RS00225 0.82 -1.6
44,188 + LU632_RS00225 0.84 -2.8
44,188 + LU632_RS00225 0.84 -1.4
44,188 + LU632_RS00225 0.84 +0.2
44,189 - LU632_RS00225 0.85 -1.1
44,197 + LU632_RS00225 0.86 +3.2
44,249 - -2.9
44,249 - +0.7
44,250 + +1.4
44,251 - -1.6
44,414 + LU632_RS00230 0.21 -1.6
44,414 + LU632_RS00230 0.21 -0.9
44,414 + LU632_RS00230 0.21 +0.0
44,415 - LU632_RS00230 0.21 +0.6
44,440 - LU632_RS00230 0.25 +2.8

Or see this region's nucleotide sequence