Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04347

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04346 and OHPLBJKB_04347 are separated by 105 nucleotidesOHPLBJKB_04347 and OHPLBJKB_04348 are separated by 223 nucleotidesOHPLBJKB_04348 and OHPLBJKB_04349 are separated by 49 nucleotides OHPLBJKB_04346: OHPLBJKB_04346 - tRNA modification GTPase MnmE, at 4,570,636 to 4,572,000 _04346 OHPLBJKB_04347: OHPLBJKB_04347 - Membrane protein insertase YidC, at 4,572,106 to 4,573,752 _04347 OHPLBJKB_04348: OHPLBJKB_04348 - Ribonuclease P protein component, at 4,573,976 to 4,574,302 _04348 OHPLBJKB_04349: OHPLBJKB_04349 - 50S ribosomal protein L34, at 4,574,352 to 4,574,492 _04349 Position (kb) 4572 4573 4574Strain fitness (log2 ratio) -2 -1 0 1at 4572.083 kb on + strandat 4573.860 kb on + strandat 4573.943 kb on + strandat 4573.958 kb on - strandat 4574.636 kb on - strandat 4574.636 kb on - strandat 4574.724 kb on - strandat 4574.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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4,572,083 + +1.3
4,573,860 + -0.1
4,573,943 + -0.8
4,573,958 - -0.1
4,574,636 - +0.3
4,574,636 - -0.7
4,574,724 - -2.1
4,574,726 - +0.8

Or see this region's nucleotide sequence