Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02532 and OHPLBJKB_02533 are separated by 171 nucleotides OHPLBJKB_02533 and OHPLBJKB_02534 are separated by 9 nucleotides
OHPLBJKB_02532: OHPLBJKB_02532 - Isocitrate dehydrogenase [NADP], at 2,643,852 to 2,645,102
_02532
OHPLBJKB_02533: OHPLBJKB_02533 - Ribosomal large subunit pseudouridine synthase E, at 2,645,274 to 2,645,927
_02533
OHPLBJKB_02534: OHPLBJKB_02534 - Phosphatase NudJ, at 2,645,937 to 2,646,398
_02534
Position (kb)
2643
2644
2645
2646 Strain fitness (log2 ratio)
-2
-1
0
1 at 2643.013 kb on - strand at 2643.127 kb on + strand at 2643.354 kb on + strand at 2643.439 kb on + strand at 2643.529 kb on + strand at 2643.789 kb on - strand at 2643.853 kb on + strand at 2645.270 kb on + strand at 2645.270 kb on + strand at 2645.270 kb on + strand at 2645.270 kb on + strand at 2645.271 kb on - strand at 2645.271 kb on - strand at 2645.271 kb on - strand at 2645.272 kb on + strand at 2645.273 kb on - strand at 2645.361 kb on - strand, within OHPLBJKB_02533 at 2645.416 kb on - strand, within OHPLBJKB_02533 at 2645.491 kb on - strand, within OHPLBJKB_02533 at 2645.601 kb on + strand, within OHPLBJKB_02533 at 2645.602 kb on - strand, within OHPLBJKB_02533 at 2645.602 kb on - strand, within OHPLBJKB_02533 at 2645.665 kb on + strand, within OHPLBJKB_02533 at 2645.665 kb on + strand, within OHPLBJKB_02533 at 2645.788 kb on + strand, within OHPLBJKB_02533 at 2645.788 kb on + strand, within OHPLBJKB_02533 at 2645.788 kb on + strand, within OHPLBJKB_02533 at 2645.788 kb on + strand, within OHPLBJKB_02533 at 2645.788 kb on + strand, within OHPLBJKB_02533 at 2645.789 kb on - strand, within OHPLBJKB_02533 at 2645.789 kb on - strand, within OHPLBJKB_02533 at 2645.789 kb on - strand, within OHPLBJKB_02533 at 2645.789 kb on - strand, within OHPLBJKB_02533 at 2645.790 kb on + strand, within OHPLBJKB_02533 at 2645.790 kb on + strand, within OHPLBJKB_02533 at 2645.790 kb on + strand, within OHPLBJKB_02533 at 2645.790 kb on + strand, within OHPLBJKB_02533 at 2645.791 kb on - strand, within OHPLBJKB_02533 at 2645.801 kb on + strand, within OHPLBJKB_02533 at 2645.801 kb on + strand, within OHPLBJKB_02533 at 2645.802 kb on - strand, within OHPLBJKB_02533 at 2645.877 kb on + strand at 2645.942 kb on + strand at 2645.943 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 2,643,013 - +0.8 2,643,127 + +1.5 2,643,354 + -0.1 2,643,439 + +0.0 2,643,529 + +0.7 2,643,789 - +0.4 2,643,853 + +0.4 2,645,270 + -2.0 2,645,270 + -0.4 2,645,270 + +0.7 2,645,270 + -0.2 2,645,271 - +0.4 2,645,271 - +0.4 2,645,271 - -0.8 2,645,272 + +0.5 2,645,273 - +0.4 2,645,361 - OHPLBJKB_02533 0.13 +0.7 2,645,416 - OHPLBJKB_02533 0.22 +0.4 2,645,491 - OHPLBJKB_02533 0.33 -0.2 2,645,601 + OHPLBJKB_02533 0.50 -0.4 2,645,602 - OHPLBJKB_02533 0.50 +0.2 2,645,602 - OHPLBJKB_02533 0.50 +0.3 2,645,665 + OHPLBJKB_02533 0.60 -1.2 2,645,665 + OHPLBJKB_02533 0.60 +0.9 2,645,788 + OHPLBJKB_02533 0.79 +0.3 2,645,788 + OHPLBJKB_02533 0.79 +1.5 2,645,788 + OHPLBJKB_02533 0.79 -1.2 2,645,788 + OHPLBJKB_02533 0.79 -0.9 2,645,788 + OHPLBJKB_02533 0.79 -0.5 2,645,789 - OHPLBJKB_02533 0.79 +0.1 2,645,789 - OHPLBJKB_02533 0.79 +0.5 2,645,789 - OHPLBJKB_02533 0.79 +1.1 2,645,789 - OHPLBJKB_02533 0.79 -0.6 2,645,790 + OHPLBJKB_02533 0.79 +0.4 2,645,790 + OHPLBJKB_02533 0.79 -1.1 2,645,790 + OHPLBJKB_02533 0.79 +0.9 2,645,790 + OHPLBJKB_02533 0.79 -0.0 2,645,791 - OHPLBJKB_02533 0.79 -0.1 2,645,801 + OHPLBJKB_02533 0.81 +0.8 2,645,801 + OHPLBJKB_02533 0.81 -2.1 2,645,802 - OHPLBJKB_02533 0.81 +0.3 2,645,877 + -1.0 2,645,942 + -1.1 2,645,943 - -1.4
Or see this region's nucleotide sequence