Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02231 and OHPLBJKB_02232 overlap by 4 nucleotides OHPLBJKB_02232 and OHPLBJKB_02233 overlap by 4 nucleotides OHPLBJKB_02233 and OHPLBJKB_02234 overlap by 8 nucleotides OHPLBJKB_02234 and OHPLBJKB_02235 are separated by 55 nucleotides
OHPLBJKB_02231: OHPLBJKB_02231 - putative D,D-dipeptide transport system permease protein DdpB, at 2,324,903 to 2,325,925
_02231
OHPLBJKB_02232: OHPLBJKB_02232 - putative D,D-dipeptide transport system permease protein DdpC, at 2,325,922 to 2,326,818
_02232
OHPLBJKB_02233: OHPLBJKB_02233 - putative D,D-dipeptide transport ATP-binding protein DdpD, at 2,326,815 to 2,327,801
_02233
OHPLBJKB_02234: OHPLBJKB_02234 - putative D,D-dipeptide transport ATP-binding protein DdpF, at 2,327,794 to 2,328,720
_02234
OHPLBJKB_02235: OHPLBJKB_02235 - Peroxiredoxin OsmC, at 2,328,776 to 2,329,207
_02235
Position (kb)
2326
2327
2328 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2325.848 kb on + strand at 2325.848 kb on + strand at 2325.881 kb on + strand at 2325.881 kb on + strand at 2325.929 kb on + strand at 2325.992 kb on + strand at 2326.043 kb on + strand, within OHPLBJKB_02232 at 2326.043 kb on + strand, within OHPLBJKB_02232 at 2326.044 kb on - strand, within OHPLBJKB_02232 at 2326.044 kb on - strand, within OHPLBJKB_02232 at 2326.044 kb on - strand, within OHPLBJKB_02232 at 2326.044 kb on - strand, within OHPLBJKB_02232 at 2326.046 kb on + strand, within OHPLBJKB_02232 at 2326.109 kb on + strand, within OHPLBJKB_02232 at 2326.109 kb on + strand, within OHPLBJKB_02232 at 2326.229 kb on + strand, within OHPLBJKB_02232 at 2326.230 kb on - strand, within OHPLBJKB_02232 at 2326.230 kb on - strand, within OHPLBJKB_02232 at 2326.230 kb on - strand, within OHPLBJKB_02232 at 2326.326 kb on + strand, within OHPLBJKB_02232 at 2326.327 kb on - strand, within OHPLBJKB_02232 at 2326.392 kb on + strand, within OHPLBJKB_02232 at 2326.413 kb on + strand, within OHPLBJKB_02232 at 2326.413 kb on + strand, within OHPLBJKB_02232 at 2326.413 kb on + strand, within OHPLBJKB_02232 at 2326.414 kb on - strand, within OHPLBJKB_02232 at 2326.414 kb on - strand, within OHPLBJKB_02232 at 2326.414 kb on - strand, within OHPLBJKB_02232 at 2326.415 kb on + strand, within OHPLBJKB_02232 at 2326.460 kb on + strand, within OHPLBJKB_02232 at 2326.460 kb on + strand, within OHPLBJKB_02232 at 2326.460 kb on + strand, within OHPLBJKB_02232 at 2326.466 kb on + strand, within OHPLBJKB_02232 at 2326.467 kb on - strand, within OHPLBJKB_02232 at 2326.467 kb on - strand, within OHPLBJKB_02232 at 2326.474 kb on + strand, within OHPLBJKB_02232 at 2326.474 kb on + strand, within OHPLBJKB_02232 at 2326.475 kb on - strand, within OHPLBJKB_02232 at 2326.476 kb on + strand, within OHPLBJKB_02232 at 2326.476 kb on + strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.542 kb on - strand, within OHPLBJKB_02232 at 2326.546 kb on - strand, within OHPLBJKB_02232 at 2326.546 kb on - strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.691 kb on + strand, within OHPLBJKB_02232 at 2326.708 kb on + strand, within OHPLBJKB_02232 at 2326.755 kb on + strand at 2326.979 kb on + strand, within OHPLBJKB_02233 at 2327.004 kb on + strand, within OHPLBJKB_02233 at 2327.005 kb on - strand, within OHPLBJKB_02233 at 2327.011 kb on + strand, within OHPLBJKB_02233 at 2327.011 kb on + strand, within OHPLBJKB_02233 at 2327.012 kb on - strand, within OHPLBJKB_02233 at 2327.012 kb on - strand, within OHPLBJKB_02233 at 2327.210 kb on + strand, within OHPLBJKB_02233 at 2327.261 kb on + strand, within OHPLBJKB_02233 at 2327.262 kb on - strand, within OHPLBJKB_02233 at 2327.418 kb on - strand, within OHPLBJKB_02233 at 2327.462 kb on + strand, within OHPLBJKB_02233 at 2327.496 kb on + strand, within OHPLBJKB_02233 at 2327.497 kb on - strand, within OHPLBJKB_02233 at 2327.505 kb on + strand, within OHPLBJKB_02233 at 2327.505 kb on + strand, within OHPLBJKB_02233 at 2327.506 kb on - strand, within OHPLBJKB_02233 at 2327.568 kb on + strand, within OHPLBJKB_02233 at 2327.568 kb on + strand, within OHPLBJKB_02233 at 2327.569 kb on - strand, within OHPLBJKB_02233 at 2327.608 kb on + strand, within OHPLBJKB_02233 at 2327.608 kb on + strand, within OHPLBJKB_02233 at 2327.620 kb on + strand, within OHPLBJKB_02233 at 2327.620 kb on + strand, within OHPLBJKB_02233 at 2327.620 kb on + strand, within OHPLBJKB_02233 at 2327.791 kb on + strand at 2327.791 kb on + strand at 2327.791 kb on + strand at 2327.792 kb on - strand at 2327.792 kb on - strand at 2327.792 kb on - strand at 2327.792 kb on - strand at 2327.792 kb on - strand at 2327.862 kb on + strand at 2327.890 kb on - strand, within OHPLBJKB_02234 at 2327.896 kb on - strand, within OHPLBJKB_02234 at 2327.903 kb on + strand, within OHPLBJKB_02234 at 2327.979 kb on - strand, within OHPLBJKB_02234 at 2327.986 kb on - strand, within OHPLBJKB_02234 at 2327.986 kb on - strand, within OHPLBJKB_02234 at 2328.011 kb on - strand, within OHPLBJKB_02234 at 2328.123 kb on + strand, within OHPLBJKB_02234 at 2328.124 kb on - strand, within OHPLBJKB_02234 at 2328.124 kb on - strand, within OHPLBJKB_02234 at 2328.129 kb on + strand, within OHPLBJKB_02234 at 2328.129 kb on + strand, within OHPLBJKB_02234 at 2328.129 kb on + strand, within OHPLBJKB_02234 at 2328.130 kb on - strand, within OHPLBJKB_02234 at 2328.130 kb on - strand, within OHPLBJKB_02234 at 2328.132 kb on + strand, within OHPLBJKB_02234 at 2328.133 kb on - strand, within OHPLBJKB_02234 at 2328.133 kb on - strand, within OHPLBJKB_02234 at 2328.243 kb on + strand, within OHPLBJKB_02234 at 2328.357 kb on - strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.380 kb on - strand, within OHPLBJKB_02234 at 2328.380 kb on - strand, within OHPLBJKB_02234 at 2328.380 kb on - strand, within OHPLBJKB_02234 at 2328.410 kb on + strand, within OHPLBJKB_02234 at 2328.410 kb on + strand, within OHPLBJKB_02234 at 2328.410 kb on + strand, within OHPLBJKB_02234 at 2328.411 kb on - strand, within OHPLBJKB_02234 at 2328.411 kb on - strand, within OHPLBJKB_02234 at 2328.411 kb on - strand, within OHPLBJKB_02234 at 2328.417 kb on + strand, within OHPLBJKB_02234 at 2328.417 kb on + strand, within OHPLBJKB_02234 at 2328.443 kb on - strand, within OHPLBJKB_02234 at 2328.505 kb on + strand, within OHPLBJKB_02234 at 2328.506 kb on - strand, within OHPLBJKB_02234 at 2328.506 kb on - strand, within OHPLBJKB_02234 at 2328.506 kb on - strand, within OHPLBJKB_02234 at 2328.569 kb on + strand, within OHPLBJKB_02234 at 2328.570 kb on - strand, within OHPLBJKB_02234
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 2,325,848 + +0.9 2,325,848 + -0.1 2,325,881 + -0.4 2,325,881 + +1.4 2,325,929 + +0.6 2,325,992 + +0.8 2,326,043 + OHPLBJKB_02232 0.13 +1.3 2,326,043 + OHPLBJKB_02232 0.13 -0.2 2,326,044 - OHPLBJKB_02232 0.14 +0.1 2,326,044 - OHPLBJKB_02232 0.14 +0.6 2,326,044 - OHPLBJKB_02232 0.14 +1.8 2,326,044 - OHPLBJKB_02232 0.14 -1.9 2,326,046 + OHPLBJKB_02232 0.14 -0.5 2,326,109 + OHPLBJKB_02232 0.21 +0.6 2,326,109 + OHPLBJKB_02232 0.21 -1.0 2,326,229 + OHPLBJKB_02232 0.34 +0.8 2,326,230 - OHPLBJKB_02232 0.34 +1.2 2,326,230 - OHPLBJKB_02232 0.34 -0.6 2,326,230 - OHPLBJKB_02232 0.34 -0.2 2,326,326 + OHPLBJKB_02232 0.45 +1.1 2,326,327 - OHPLBJKB_02232 0.45 -0.8 2,326,392 + OHPLBJKB_02232 0.52 +0.7 2,326,413 + OHPLBJKB_02232 0.55 -1.0 2,326,413 + OHPLBJKB_02232 0.55 +1.1 2,326,413 + OHPLBJKB_02232 0.55 -0.8 2,326,414 - OHPLBJKB_02232 0.55 -1.6 2,326,414 - OHPLBJKB_02232 0.55 +0.6 2,326,414 - OHPLBJKB_02232 0.55 -0.5 2,326,415 + OHPLBJKB_02232 0.55 -0.9 2,326,460 + OHPLBJKB_02232 0.60 +0.5 2,326,460 + OHPLBJKB_02232 0.60 +0.3 2,326,460 + OHPLBJKB_02232 0.60 +0.4 2,326,466 + OHPLBJKB_02232 0.61 +1.1 2,326,467 - OHPLBJKB_02232 0.61 -0.8 2,326,467 - OHPLBJKB_02232 0.61 -0.6 2,326,474 + OHPLBJKB_02232 0.62 +0.2 2,326,474 + OHPLBJKB_02232 0.62 +2.6 2,326,475 - OHPLBJKB_02232 0.62 -1.2 2,326,476 + OHPLBJKB_02232 0.62 +0.2 2,326,476 + OHPLBJKB_02232 0.62 -0.8 2,326,477 - OHPLBJKB_02232 0.62 -0.8 2,326,477 - OHPLBJKB_02232 0.62 -1.2 2,326,477 - OHPLBJKB_02232 0.62 -0.5 2,326,477 - OHPLBJKB_02232 0.62 -0.2 2,326,477 - OHPLBJKB_02232 0.62 -1.0 2,326,477 - OHPLBJKB_02232 0.62 -0.1 2,326,477 - OHPLBJKB_02232 0.62 -0.1 2,326,477 - OHPLBJKB_02232 0.62 +0.2 2,326,477 - OHPLBJKB_02232 0.62 -0.8 2,326,480 + OHPLBJKB_02232 0.62 +0.7 2,326,480 + OHPLBJKB_02232 0.62 -0.5 2,326,480 + OHPLBJKB_02232 0.62 -0.9 2,326,480 + OHPLBJKB_02232 0.62 +1.6 2,326,480 + OHPLBJKB_02232 0.62 -0.3 2,326,480 + OHPLBJKB_02232 0.62 -0.6 2,326,480 + OHPLBJKB_02232 0.62 +0.8 2,326,481 - OHPLBJKB_02232 0.62 +0.4 2,326,481 - OHPLBJKB_02232 0.62 -1.0 2,326,481 - OHPLBJKB_02232 0.62 +0.2 2,326,481 - OHPLBJKB_02232 0.62 +1.0 2,326,481 - OHPLBJKB_02232 0.62 -1.0 2,326,542 - OHPLBJKB_02232 0.69 +0.5 2,326,546 - OHPLBJKB_02232 0.70 +2.0 2,326,546 - OHPLBJKB_02232 0.70 +1.4 2,326,687 + OHPLBJKB_02232 0.85 -0.4 2,326,687 + OHPLBJKB_02232 0.85 +0.4 2,326,687 + OHPLBJKB_02232 0.85 -0.2 2,326,687 + OHPLBJKB_02232 0.85 +0.8 2,326,687 + OHPLBJKB_02232 0.85 +0.1 2,326,687 + OHPLBJKB_02232 0.85 +0.2 2,326,687 + OHPLBJKB_02232 0.85 -0.3 2,326,687 + OHPLBJKB_02232 0.85 +1.2 2,326,687 + OHPLBJKB_02232 0.85 -1.1 2,326,687 + OHPLBJKB_02232 0.85 +0.4 2,326,688 - OHPLBJKB_02232 0.85 +0.7 2,326,688 - OHPLBJKB_02232 0.85 +2.1 2,326,688 - OHPLBJKB_02232 0.85 +1.1 2,326,688 - OHPLBJKB_02232 0.85 -0.8 2,326,688 - OHPLBJKB_02232 0.85 +0.7 2,326,688 - OHPLBJKB_02232 0.85 -1.0 2,326,688 - OHPLBJKB_02232 0.85 +0.5 2,326,688 - OHPLBJKB_02232 0.85 -1.8 2,326,688 - OHPLBJKB_02232 0.85 -0.1 2,326,688 - OHPLBJKB_02232 0.85 -0.4 2,326,688 - OHPLBJKB_02232 0.85 +0.4 2,326,688 - OHPLBJKB_02232 0.85 +0.0 2,326,688 - OHPLBJKB_02232 0.85 -0.2 2,326,688 - OHPLBJKB_02232 0.85 +0.5 2,326,691 + OHPLBJKB_02232 0.86 -1.1 2,326,708 + OHPLBJKB_02232 0.88 +0.2 2,326,755 + +0.1 2,326,979 + OHPLBJKB_02233 0.17 +0.4 2,327,004 + OHPLBJKB_02233 0.19 -0.4 2,327,005 - OHPLBJKB_02233 0.19 -0.9 2,327,011 + OHPLBJKB_02233 0.20 +1.0 2,327,011 + OHPLBJKB_02233 0.20 +1.1 2,327,012 - OHPLBJKB_02233 0.20 +0.8 2,327,012 - OHPLBJKB_02233 0.20 +1.1 2,327,210 + OHPLBJKB_02233 0.40 -0.5 2,327,261 + OHPLBJKB_02233 0.45 -0.5 2,327,262 - OHPLBJKB_02233 0.45 +0.2 2,327,418 - OHPLBJKB_02233 0.61 +0.1 2,327,462 + OHPLBJKB_02233 0.66 -0.1 2,327,496 + OHPLBJKB_02233 0.69 +0.0 2,327,497 - OHPLBJKB_02233 0.69 +0.4 2,327,505 + OHPLBJKB_02233 0.70 -0.2 2,327,505 + OHPLBJKB_02233 0.70 -0.3 2,327,506 - OHPLBJKB_02233 0.70 -0.2 2,327,568 + OHPLBJKB_02233 0.76 -0.2 2,327,568 + OHPLBJKB_02233 0.76 +0.4 2,327,569 - OHPLBJKB_02233 0.76 -1.0 2,327,608 + OHPLBJKB_02233 0.80 -1.0 2,327,608 + OHPLBJKB_02233 0.80 +1.2 2,327,620 + OHPLBJKB_02233 0.82 -0.6 2,327,620 + OHPLBJKB_02233 0.82 +0.0 2,327,620 + OHPLBJKB_02233 0.82 +1.5 2,327,791 + +0.2 2,327,791 + +1.4 2,327,791 + -0.6 2,327,792 - +1.6 2,327,792 - -0.2 2,327,792 - -0.3 2,327,792 - -0.8 2,327,792 - -1.0 2,327,862 + +0.5 2,327,890 - OHPLBJKB_02234 0.10 -1.8 2,327,896 - OHPLBJKB_02234 0.11 +0.3 2,327,903 + OHPLBJKB_02234 0.12 -1.2 2,327,979 - OHPLBJKB_02234 0.20 +1.2 2,327,986 - OHPLBJKB_02234 0.21 +0.1 2,327,986 - OHPLBJKB_02234 0.21 +0.2 2,328,011 - OHPLBJKB_02234 0.23 -1.0 2,328,123 + OHPLBJKB_02234 0.35 +1.0 2,328,124 - OHPLBJKB_02234 0.36 -0.8 2,328,124 - OHPLBJKB_02234 0.36 -0.7 2,328,129 + OHPLBJKB_02234 0.36 -0.6 2,328,129 + OHPLBJKB_02234 0.36 -0.3 2,328,129 + OHPLBJKB_02234 0.36 +1.8 2,328,130 - OHPLBJKB_02234 0.36 -2.4 2,328,130 - OHPLBJKB_02234 0.36 +1.4 2,328,132 + OHPLBJKB_02234 0.36 +1.2 2,328,133 - OHPLBJKB_02234 0.37 -0.3 2,328,133 - OHPLBJKB_02234 0.37 -0.3 2,328,243 + OHPLBJKB_02234 0.48 -1.3 2,328,357 - OHPLBJKB_02234 0.61 -0.2 2,328,379 + OHPLBJKB_02234 0.63 -0.5 2,328,379 + OHPLBJKB_02234 0.63 -1.5 2,328,379 + OHPLBJKB_02234 0.63 +0.1 2,328,379 + OHPLBJKB_02234 0.63 +0.0 2,328,379 + OHPLBJKB_02234 0.63 -0.5 2,328,380 - OHPLBJKB_02234 0.63 +2.4 2,328,380 - OHPLBJKB_02234 0.63 -1.4 2,328,380 - OHPLBJKB_02234 0.63 +0.2 2,328,410 + OHPLBJKB_02234 0.66 -0.9 2,328,410 + OHPLBJKB_02234 0.66 -0.8 2,328,410 + OHPLBJKB_02234 0.66 +0.3 2,328,411 - OHPLBJKB_02234 0.67 -1.1 2,328,411 - OHPLBJKB_02234 0.67 +0.5 2,328,411 - OHPLBJKB_02234 0.67 -0.2 2,328,417 + OHPLBJKB_02234 0.67 -0.6 2,328,417 + OHPLBJKB_02234 0.67 -0.5 2,328,443 - OHPLBJKB_02234 0.70 -2.4 2,328,505 + OHPLBJKB_02234 0.77 -0.0 2,328,506 - OHPLBJKB_02234 0.77 -0.3 2,328,506 - OHPLBJKB_02234 0.77 -0.7 2,328,506 - OHPLBJKB_02234 0.77 -1.5 2,328,569 + OHPLBJKB_02234 0.84 -1.2 2,328,570 - OHPLBJKB_02234 0.84 +1.8
Or see this region's nucleotide sequence