Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02044

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02043 and OHPLBJKB_02044 overlap by 4 nucleotidesOHPLBJKB_02044 and OHPLBJKB_02045 are separated by 12 nucleotidesOHPLBJKB_02045 and OHPLBJKB_02046 are separated by 148 nucleotides OHPLBJKB_02043: OHPLBJKB_02043 - FeS cluster assembly protein SufD, at 2,118,829 to 2,120,100 _02043 OHPLBJKB_02044: OHPLBJKB_02044 - Cysteine desulfurase, at 2,120,097 to 2,121,317 _02044 OHPLBJKB_02045: OHPLBJKB_02045 - Cysteine desulfuration protein SufE, at 2,121,330 to 2,121,746 _02045 OHPLBJKB_02046: OHPLBJKB_02046 - putative L,D-transpeptidase YnhG, at 2,121,895 to 2,122,899 _02046 Position (kb) 2120 2121 2122Strain fitness (log2 ratio) -2 -1 0 1 2at 2119.296 kb on + strand, within OHPLBJKB_02043at 2119.296 kb on + strand, within OHPLBJKB_02043at 2119.296 kb on + strand, within OHPLBJKB_02043at 2119.296 kb on + strand, within OHPLBJKB_02043at 2119.296 kb on + strand, within OHPLBJKB_02043at 2119.297 kb on - strand, within OHPLBJKB_02043at 2119.474 kb on - strand, within OHPLBJKB_02043at 2119.586 kb on + strand, within OHPLBJKB_02043at 2119.586 kb on + strand, within OHPLBJKB_02043at 2119.587 kb on - strand, within OHPLBJKB_02043at 2119.587 kb on - strand, within OHPLBJKB_02043at 2119.737 kb on + strand, within OHPLBJKB_02043at 2119.764 kb on - strand, within OHPLBJKB_02043at 2119.860 kb on + strand, within OHPLBJKB_02043at 2119.883 kb on - strand, within OHPLBJKB_02043at 2119.999 kb on + strandat 2119.999 kb on + strandat 2120.047 kb on - strandat 2120.093 kb on + strandat 2120.093 kb on + strandat 2120.094 kb on - strandat 2120.094 kb on - strandat 2120.236 kb on - strand, within OHPLBJKB_02044at 2120.273 kb on + strand, within OHPLBJKB_02044at 2120.274 kb on - strand, within OHPLBJKB_02044at 2120.278 kb on + strand, within OHPLBJKB_02044at 2120.279 kb on - strand, within OHPLBJKB_02044at 2120.311 kb on + strand, within OHPLBJKB_02044at 2120.311 kb on + strand, within OHPLBJKB_02044at 2120.312 kb on - strand, within OHPLBJKB_02044at 2120.312 kb on - strand, within OHPLBJKB_02044at 2120.334 kb on - strand, within OHPLBJKB_02044at 2120.449 kb on + strand, within OHPLBJKB_02044at 2120.449 kb on + strand, within OHPLBJKB_02044at 2120.450 kb on - strand, within OHPLBJKB_02044at 2120.450 kb on - strand, within OHPLBJKB_02044at 2120.450 kb on - strand, within OHPLBJKB_02044at 2120.450 kb on - strand, within OHPLBJKB_02044at 2120.547 kb on - strand, within OHPLBJKB_02044at 2120.547 kb on - strand, within OHPLBJKB_02044at 2120.547 kb on - strand, within OHPLBJKB_02044at 2120.547 kb on - strand, within OHPLBJKB_02044at 2120.606 kb on + strand, within OHPLBJKB_02044at 2120.606 kb on + strand, within OHPLBJKB_02044at 2120.607 kb on - strand, within OHPLBJKB_02044at 2120.754 kb on + strand, within OHPLBJKB_02044at 2120.755 kb on - strand, within OHPLBJKB_02044at 2120.805 kb on + strand, within OHPLBJKB_02044at 2120.806 kb on - strand, within OHPLBJKB_02044at 2120.858 kb on + strand, within OHPLBJKB_02044at 2120.892 kb on - strand, within OHPLBJKB_02044at 2120.993 kb on + strand, within OHPLBJKB_02044at 2120.993 kb on + strand, within OHPLBJKB_02044at 2120.993 kb on + strand, within OHPLBJKB_02044at 2120.994 kb on - strand, within OHPLBJKB_02044at 2120.997 kb on - strand, within OHPLBJKB_02044at 2121.030 kb on + strand, within OHPLBJKB_02044at 2121.030 kb on + strand, within OHPLBJKB_02044at 2121.099 kb on - strand, within OHPLBJKB_02044at 2121.129 kb on + strand, within OHPLBJKB_02044at 2121.207 kb on + strandat 2121.208 kb on - strandat 2121.208 kb on - strandat 2121.210 kb on + strandat 2121.210 kb on + strandat 2121.210 kb on + strandat 2121.210 kb on + strandat 2121.210 kb on + strandat 2121.210 kb on + strandat 2121.211 kb on - strandat 2121.211 kb on - strandat 2121.211 kb on - strandat 2121.249 kb on + strandat 2121.249 kb on + strandat 2121.249 kb on + strandat 2121.249 kb on + strandat 2121.249 kb on + strandat 2121.249 kb on + strandat 2121.249 kb on + strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.250 kb on - strandat 2121.251 kb on + strandat 2121.251 kb on + strandat 2121.251 kb on + strandat 2121.296 kb on + strandat 2121.296 kb on + strandat 2121.297 kb on - strandat 2121.297 kb on - strandat 2121.399 kb on + strand, within OHPLBJKB_02045at 2121.400 kb on - strand, within OHPLBJKB_02045at 2121.400 kb on - strand, within OHPLBJKB_02045at 2121.405 kb on + strand, within OHPLBJKB_02045at 2121.405 kb on + strand, within OHPLBJKB_02045at 2121.406 kb on - strand, within OHPLBJKB_02045at 2121.406 kb on - strand, within OHPLBJKB_02045at 2121.467 kb on + strand, within OHPLBJKB_02045at 2121.535 kb on + strand, within OHPLBJKB_02045at 2121.617 kb on + strand, within OHPLBJKB_02045at 2121.617 kb on + strand, within OHPLBJKB_02045at 2121.618 kb on - strand, within OHPLBJKB_02045at 2121.740 kb on + strandat 2121.740 kb on + strandat 2121.741 kb on - strandat 2121.745 kb on - strandat 2121.745 kb on - strandat 2121.749 kb on + strandat 2121.749 kb on + strandat 2121.750 kb on - strandat 2121.801 kb on - strandat 2121.801 kb on - strandat 2121.841 kb on + strandat 2121.842 kb on - strandat 2121.842 kb on - strandat 2121.881 kb on - strandat 2121.881 kb on - strandat 2121.891 kb on + strandat 2121.891 kb on + strandat 2121.892 kb on - strandat 2121.915 kb on + strandat 2121.939 kb on + strandat 2122.018 kb on + strand, within OHPLBJKB_02046at 2122.019 kb on - strand, within OHPLBJKB_02046at 2122.019 kb on - strand, within OHPLBJKB_02046at 2122.019 kb on - strand, within OHPLBJKB_02046at 2122.020 kb on + strand, within OHPLBJKB_02046at 2122.020 kb on + strand, within OHPLBJKB_02046at 2122.020 kb on + strand, within OHPLBJKB_02046at 2122.021 kb on - strand, within OHPLBJKB_02046at 2122.101 kb on + strand, within OHPLBJKB_02046at 2122.139 kb on + strand, within OHPLBJKB_02046at 2122.139 kb on + strand, within OHPLBJKB_02046at 2122.140 kb on - strand, within OHPLBJKB_02046at 2122.143 kb on + strand, within OHPLBJKB_02046at 2122.143 kb on + strand, within OHPLBJKB_02046at 2122.144 kb on - strand, within OHPLBJKB_02046at 2122.161 kb on - strand, within OHPLBJKB_02046at 2122.161 kb on - strand, within OHPLBJKB_02046at 2122.164 kb on - strand, within OHPLBJKB_02046at 2122.220 kb on - strand, within OHPLBJKB_02046at 2122.220 kb on - strand, within OHPLBJKB_02046at 2122.220 kb on - strand, within OHPLBJKB_02046at 2122.220 kb on - strand, within OHPLBJKB_02046at 2122.239 kb on + strand, within OHPLBJKB_02046at 2122.240 kb on - strand, within OHPLBJKB_02046at 2122.260 kb on - strand, within OHPLBJKB_02046at 2122.263 kb on + strand, within OHPLBJKB_02046at 2122.264 kb on - strand, within OHPLBJKB_02046

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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2,119,296 + OHPLBJKB_02043 0.37 -0.6
2,119,296 + OHPLBJKB_02043 0.37 +0.3
2,119,296 + OHPLBJKB_02043 0.37 +0.3
2,119,296 + OHPLBJKB_02043 0.37 +0.3
2,119,296 + OHPLBJKB_02043 0.37 +0.3
2,119,297 - OHPLBJKB_02043 0.37 +0.3
2,119,474 - OHPLBJKB_02043 0.51 -1.3
2,119,586 + OHPLBJKB_02043 0.60 +0.1
2,119,586 + OHPLBJKB_02043 0.60 -0.1
2,119,587 - OHPLBJKB_02043 0.60 +0.9
2,119,587 - OHPLBJKB_02043 0.60 +0.6
2,119,737 + OHPLBJKB_02043 0.71 +1.7
2,119,764 - OHPLBJKB_02043 0.74 +1.2
2,119,860 + OHPLBJKB_02043 0.81 -0.2
2,119,883 - OHPLBJKB_02043 0.83 +0.1
2,119,999 + -0.4
2,119,999 + -2.4
2,120,047 - -0.1
2,120,093 + -0.1
2,120,093 + +1.5
2,120,094 - -0.9
2,120,094 - +0.6
2,120,236 - OHPLBJKB_02044 0.11 -1.0
2,120,273 + OHPLBJKB_02044 0.14 -0.2
2,120,274 - OHPLBJKB_02044 0.14 +0.5
2,120,278 + OHPLBJKB_02044 0.15 +0.1
2,120,279 - OHPLBJKB_02044 0.15 +1.2
2,120,311 + OHPLBJKB_02044 0.18 -0.1
2,120,311 + OHPLBJKB_02044 0.18 +0.6
2,120,312 - OHPLBJKB_02044 0.18 +0.2
2,120,312 - OHPLBJKB_02044 0.18 +1.1
2,120,334 - OHPLBJKB_02044 0.19 -0.7
2,120,449 + OHPLBJKB_02044 0.29 +0.1
2,120,449 + OHPLBJKB_02044 0.29 -0.4
2,120,450 - OHPLBJKB_02044 0.29 -1.4
2,120,450 - OHPLBJKB_02044 0.29 +0.3
2,120,450 - OHPLBJKB_02044 0.29 +1.3
2,120,450 - OHPLBJKB_02044 0.29 -0.1
2,120,547 - OHPLBJKB_02044 0.37 -0.9
2,120,547 - OHPLBJKB_02044 0.37 -0.1
2,120,547 - OHPLBJKB_02044 0.37 +1.9
2,120,547 - OHPLBJKB_02044 0.37 -1.8
2,120,606 + OHPLBJKB_02044 0.42 -0.4
2,120,606 + OHPLBJKB_02044 0.42 +1.5
2,120,607 - OHPLBJKB_02044 0.42 -0.7
2,120,754 + OHPLBJKB_02044 0.54 -0.6
2,120,755 - OHPLBJKB_02044 0.54 -0.9
2,120,805 + OHPLBJKB_02044 0.58 +0.2
2,120,806 - OHPLBJKB_02044 0.58 +1.9
2,120,858 + OHPLBJKB_02044 0.62 -0.9
2,120,892 - OHPLBJKB_02044 0.65 -0.5
2,120,993 + OHPLBJKB_02044 0.73 -0.0
2,120,993 + OHPLBJKB_02044 0.73 -1.4
2,120,993 + OHPLBJKB_02044 0.73 -2.7
2,120,994 - OHPLBJKB_02044 0.73 -1.8
2,120,997 - OHPLBJKB_02044 0.74 -0.6
2,121,030 + OHPLBJKB_02044 0.76 -1.1
2,121,030 + OHPLBJKB_02044 0.76 -0.2
2,121,099 - OHPLBJKB_02044 0.82 +0.6
2,121,129 + OHPLBJKB_02044 0.85 -2.6
2,121,207 + +1.3
2,121,208 - +0.6
2,121,208 - +0.6
2,121,210 + -1.2
2,121,210 + +0.6
2,121,210 + +1.2
2,121,210 + -1.9
2,121,210 + +0.4
2,121,210 + +0.3
2,121,211 - +1.1
2,121,211 - +0.9
2,121,211 - +0.0
2,121,249 + -1.4
2,121,249 + +1.2
2,121,249 + +0.9
2,121,249 + -1.3
2,121,249 + -0.7
2,121,249 + +0.0
2,121,249 + -0.9
2,121,250 - -0.9
2,121,250 - +0.3
2,121,250 - +0.2
2,121,250 - -0.9
2,121,250 - +0.9
2,121,250 - -1.0
2,121,250 - -0.9
2,121,250 - +0.2
2,121,250 - +0.7
2,121,250 - -0.7
2,121,250 - +1.0
2,121,250 - +1.2
2,121,250 - -1.0
2,121,250 - +0.0
2,121,250 - +0.9
2,121,251 + -1.9
2,121,251 + -0.3
2,121,251 + -1.3
2,121,296 + +0.0
2,121,296 + +0.5
2,121,297 - +1.9
2,121,297 - +1.9
2,121,399 + OHPLBJKB_02045 0.17 -1.0
2,121,400 - OHPLBJKB_02045 0.17 -0.4
2,121,400 - OHPLBJKB_02045 0.17 -0.5
2,121,405 + OHPLBJKB_02045 0.18 +0.7
2,121,405 + OHPLBJKB_02045 0.18 -2.4
2,121,406 - OHPLBJKB_02045 0.18 -0.4
2,121,406 - OHPLBJKB_02045 0.18 -0.7
2,121,467 + OHPLBJKB_02045 0.33 +0.6
2,121,535 + OHPLBJKB_02045 0.49 -1.4
2,121,617 + OHPLBJKB_02045 0.69 +1.1
2,121,617 + OHPLBJKB_02045 0.69 +0.3
2,121,618 - OHPLBJKB_02045 0.69 +0.3
2,121,740 + +1.4
2,121,740 + +1.9
2,121,741 - -1.8
2,121,745 - -0.7
2,121,745 - +0.3
2,121,749 + -1.1
2,121,749 + -1.5
2,121,750 - +0.8
2,121,801 - -0.3
2,121,801 - -0.6
2,121,841 + +0.8
2,121,842 - -0.9
2,121,842 - -0.2
2,121,881 - +1.1
2,121,881 - +0.2
2,121,891 + +0.6
2,121,891 + +0.3
2,121,892 - -0.0
2,121,915 + +0.3
2,121,939 + -0.3
2,122,018 + OHPLBJKB_02046 0.12 -0.1
2,122,019 - OHPLBJKB_02046 0.12 +0.9
2,122,019 - OHPLBJKB_02046 0.12 +0.3
2,122,019 - OHPLBJKB_02046 0.12 -0.3
2,122,020 + OHPLBJKB_02046 0.12 +0.2
2,122,020 + OHPLBJKB_02046 0.12 -0.9
2,122,020 + OHPLBJKB_02046 0.12 -0.7
2,122,021 - OHPLBJKB_02046 0.13 +0.1
2,122,101 + OHPLBJKB_02046 0.20 +0.9
2,122,139 + OHPLBJKB_02046 0.24 -2.6
2,122,139 + OHPLBJKB_02046 0.24 +1.2
2,122,140 - OHPLBJKB_02046 0.24 -0.2
2,122,143 + OHPLBJKB_02046 0.25 +0.6
2,122,143 + OHPLBJKB_02046 0.25 +0.7
2,122,144 - OHPLBJKB_02046 0.25 -0.4
2,122,161 - OHPLBJKB_02046 0.26 -0.1
2,122,161 - OHPLBJKB_02046 0.26 +0.3
2,122,164 - OHPLBJKB_02046 0.27 -1.4
2,122,220 - OHPLBJKB_02046 0.32 -0.1
2,122,220 - OHPLBJKB_02046 0.32 -0.2
2,122,220 - OHPLBJKB_02046 0.32 -1.0
2,122,220 - OHPLBJKB_02046 0.32 +0.1
2,122,239 + OHPLBJKB_02046 0.34 +0.2
2,122,240 - OHPLBJKB_02046 0.34 -1.6
2,122,260 - OHPLBJKB_02046 0.36 -0.4
2,122,263 + OHPLBJKB_02046 0.37 +0.9
2,122,264 - OHPLBJKB_02046 0.37 -1.7

Or see this region's nucleotide sequence