Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01862 and OHPLBJKB_01863 are separated by 60 nucleotides OHPLBJKB_01863 and OHPLBJKB_01864 are separated by 28 nucleotides OHPLBJKB_01864 and OHPLBJKB_01865 are separated by 34 nucleotides
OHPLBJKB_01862: OHPLBJKB_01862 - Aspartate--tRNA ligase, at 1,940,933 to 1,942,705
_01862
OHPLBJKB_01863: OHPLBJKB_01863 - Dihydroneopterin triphosphate diphosphatase, at 1,942,766 to 1,943,275
_01863
OHPLBJKB_01864: OHPLBJKB_01864 - putative transcriptional regulatory protein YebC, at 1,943,304 to 1,944,044
_01864
OHPLBJKB_01865: OHPLBJKB_01865 - Crossover junction endodeoxyribonuclease RuvC, at 1,944,079 to 1,944,600
_01865
Position (kb) 1942
1943
1944 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1942.699 kb on + strand at 1942.699 kb on + strand at 1942.718 kb on - strand at 1942.773 kb on + strand at 1942.773 kb on + strand at 1942.774 kb on - strand at 1942.777 kb on + strand at 1942.778 kb on - strand at 1942.778 kb on - strand at 1942.778 kb on - strand at 1942.778 kb on - strand at 1942.778 kb on - strand at 1942.778 kb on - strand at 1942.778 kb on - strand at 1942.781 kb on + strand at 1942.781 kb on + strand at 1942.781 kb on + strand at 1942.781 kb on + strand at 1942.781 kb on + strand at 1942.781 kb on + strand at 1942.782 kb on - strand at 1942.782 kb on - strand at 1942.782 kb on - strand at 1942.838 kb on + strand, within OHPLBJKB_01863 at 1942.838 kb on + strand, within OHPLBJKB_01863 at 1942.838 kb on + strand, within OHPLBJKB_01863 at 1942.839 kb on - strand, within OHPLBJKB_01863 at 1942.839 kb on - strand, within OHPLBJKB_01863 at 1942.839 kb on - strand, within OHPLBJKB_01863 at 1942.839 kb on - strand, within OHPLBJKB_01863 at 1942.839 kb on - strand, within OHPLBJKB_01863 at 1942.839 kb on - strand, within OHPLBJKB_01863 at 1942.840 kb on + strand, within OHPLBJKB_01863 at 1942.840 kb on + strand, within OHPLBJKB_01863 at 1942.871 kb on + strand, within OHPLBJKB_01863 at 1942.993 kb on - strand, within OHPLBJKB_01863 at 1943.037 kb on + strand, within OHPLBJKB_01863 at 1943.038 kb on - strand, within OHPLBJKB_01863 at 1943.058 kb on + strand, within OHPLBJKB_01863 at 1943.059 kb on - strand, within OHPLBJKB_01863 at 1943.082 kb on + strand, within OHPLBJKB_01863 at 1943.094 kb on - strand, within OHPLBJKB_01863 at 1943.094 kb on - strand, within OHPLBJKB_01863 at 1943.259 kb on + strand at 1943.263 kb on + strand at 1943.263 kb on + strand at 1943.287 kb on + strand at 1943.315 kb on + strand at 1943.318 kb on + strand at 1943.318 kb on + strand at 1943.360 kb on + strand at 1943.562 kb on + strand, within OHPLBJKB_01864 at 1943.563 kb on - strand, within OHPLBJKB_01864 at 1943.697 kb on + strand, within OHPLBJKB_01864 at 1943.796 kb on + strand, within OHPLBJKB_01864 at 1943.796 kb on + strand, within OHPLBJKB_01864 at 1943.820 kb on + strand, within OHPLBJKB_01864 at 1943.820 kb on + strand, within OHPLBJKB_01864 at 1943.820 kb on + strand, within OHPLBJKB_01864
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 1,942,699 + +0.5 1,942,699 + +0.3 1,942,718 - +0.9 1,942,773 + +1.5 1,942,773 + +0.9 1,942,774 - -0.1 1,942,777 + +0.2 1,942,778 - -0.7 1,942,778 - +0.9 1,942,778 - -1.9 1,942,778 - +1.9 1,942,778 - +0.1 1,942,778 - -2.0 1,942,778 - -1.9 1,942,781 + +0.8 1,942,781 + +1.3 1,942,781 + +1.5 1,942,781 + -1.4 1,942,781 + -0.2 1,942,781 + +0.9 1,942,782 - -0.7 1,942,782 - +0.3 1,942,782 - +0.3 1,942,838 + OHPLBJKB_01863 0.14 -0.7 1,942,838 + OHPLBJKB_01863 0.14 -0.5 1,942,838 + OHPLBJKB_01863 0.14 +0.3 1,942,839 - OHPLBJKB_01863 0.14 -1.4 1,942,839 - OHPLBJKB_01863 0.14 -2.2 1,942,839 - OHPLBJKB_01863 0.14 +1.6 1,942,839 - OHPLBJKB_01863 0.14 -0.9 1,942,839 - OHPLBJKB_01863 0.14 -0.4 1,942,839 - OHPLBJKB_01863 0.14 -0.1 1,942,840 + OHPLBJKB_01863 0.15 -0.1 1,942,840 + OHPLBJKB_01863 0.15 -0.4 1,942,871 + OHPLBJKB_01863 0.21 -2.4 1,942,993 - OHPLBJKB_01863 0.45 +0.1 1,943,037 + OHPLBJKB_01863 0.53 +0.4 1,943,038 - OHPLBJKB_01863 0.53 +0.3 1,943,058 + OHPLBJKB_01863 0.57 -0.1 1,943,059 - OHPLBJKB_01863 0.57 -0.1 1,943,082 + OHPLBJKB_01863 0.62 -1.4 1,943,094 - OHPLBJKB_01863 0.64 -0.7 1,943,094 - OHPLBJKB_01863 0.64 +0.8 1,943,259 + -0.9 1,943,263 + +0.6 1,943,263 + -1.8 1,943,287 + +1.3 1,943,315 + -0.8 1,943,318 + -0.9 1,943,318 + +0.3 1,943,360 + -0.9 1,943,562 + OHPLBJKB_01864 0.35 -1.2 1,943,563 - OHPLBJKB_01864 0.35 -0.1 1,943,697 + OHPLBJKB_01864 0.53 +0.3 1,943,796 + OHPLBJKB_01864 0.66 -1.0 1,943,796 + OHPLBJKB_01864 0.66 +0.6 1,943,820 + OHPLBJKB_01864 0.70 +0.4 1,943,820 + OHPLBJKB_01864 0.70 +1.3 1,943,820 + OHPLBJKB_01864 0.70 +0.4
Or see this region's nucleotide sequence