Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00852 and OHPLBJKB_00853 are separated by 22 nucleotides OHPLBJKB_00853 and OHPLBJKB_00854 are separated by 254 nucleotides
OHPLBJKB_00852: OHPLBJKB_00852 - hypothetical protein, at 884,641 to 886,185
_00852
OHPLBJKB_00853: OHPLBJKB_00853 - hypothetical protein, at 886,208 to 886,486
_00853
OHPLBJKB_00854: OHPLBJKB_00854 - IS3 family transposase ISEhe3, at 886,741 to 887,355
_00854
Position (kb) 886
887 Strain fitness (log2 ratio) -2
-1
0
1
2 at 885.271 kb on - strand, within OHPLBJKB_00852 at 885.271 kb on - strand, within OHPLBJKB_00852 at 885.287 kb on + strand, within OHPLBJKB_00852 at 885.287 kb on + strand, within OHPLBJKB_00852 at 885.287 kb on + strand, within OHPLBJKB_00852 at 885.288 kb on - strand, within OHPLBJKB_00852 at 885.310 kb on - strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.312 kb on - strand, within OHPLBJKB_00852 at 885.312 kb on - strand, within OHPLBJKB_00852 at 885.312 kb on - strand, within OHPLBJKB_00852 at 885.312 kb on - strand, within OHPLBJKB_00852 at 885.331 kb on - strand, within OHPLBJKB_00852 at 885.333 kb on + strand, within OHPLBJKB_00852 at 885.333 kb on + strand, within OHPLBJKB_00852 at 885.333 kb on + strand, within OHPLBJKB_00852 at 885.333 kb on + strand, within OHPLBJKB_00852 at 885.334 kb on - strand, within OHPLBJKB_00852 at 885.334 kb on - strand, within OHPLBJKB_00852 at 885.416 kb on - strand, within OHPLBJKB_00852 at 885.512 kb on + strand, within OHPLBJKB_00852 at 885.618 kb on + strand, within OHPLBJKB_00852 at 885.635 kb on + strand, within OHPLBJKB_00852 at 885.654 kb on - strand, within OHPLBJKB_00852 at 885.720 kb on + strand, within OHPLBJKB_00852 at 885.720 kb on + strand, within OHPLBJKB_00852 at 885.721 kb on - strand, within OHPLBJKB_00852 at 885.727 kb on - strand, within OHPLBJKB_00852 at 885.727 kb on - strand, within OHPLBJKB_00852 at 885.752 kb on + strand, within OHPLBJKB_00852 at 885.834 kb on + strand, within OHPLBJKB_00852 at 886.066 kb on - strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.119 kb on + strand at 886.120 kb on - strand at 886.123 kb on + strand at 886.123 kb on + strand at 886.124 kb on - strand at 886.124 kb on - strand at 886.124 kb on - strand at 887.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 885,271 - OHPLBJKB_00852 0.41 +0.1 885,271 - OHPLBJKB_00852 0.41 +0.7 885,287 + OHPLBJKB_00852 0.42 -0.8 885,287 + OHPLBJKB_00852 0.42 -0.4 885,287 + OHPLBJKB_00852 0.42 +0.1 885,288 - OHPLBJKB_00852 0.42 -1.1 885,310 - OHPLBJKB_00852 0.43 +0.4 885,311 + OHPLBJKB_00852 0.43 -0.0 885,311 + OHPLBJKB_00852 0.43 +1.3 885,311 + OHPLBJKB_00852 0.43 +0.5 885,311 + OHPLBJKB_00852 0.43 -0.5 885,311 + OHPLBJKB_00852 0.43 -0.7 885,311 + OHPLBJKB_00852 0.43 -1.2 885,311 + OHPLBJKB_00852 0.43 +0.3 885,312 - OHPLBJKB_00852 0.43 -1.0 885,312 - OHPLBJKB_00852 0.43 +1.6 885,312 - OHPLBJKB_00852 0.43 +0.5 885,312 - OHPLBJKB_00852 0.43 -0.2 885,331 - OHPLBJKB_00852 0.45 +0.1 885,333 + OHPLBJKB_00852 0.45 +0.9 885,333 + OHPLBJKB_00852 0.45 +0.7 885,333 + OHPLBJKB_00852 0.45 -0.1 885,333 + OHPLBJKB_00852 0.45 +0.0 885,334 - OHPLBJKB_00852 0.45 +0.5 885,334 - OHPLBJKB_00852 0.45 +0.3 885,416 - OHPLBJKB_00852 0.50 -1.2 885,512 + OHPLBJKB_00852 0.56 +0.3 885,618 + OHPLBJKB_00852 0.63 +0.1 885,635 + OHPLBJKB_00852 0.64 +0.0 885,654 - OHPLBJKB_00852 0.66 +0.2 885,720 + OHPLBJKB_00852 0.70 -0.0 885,720 + OHPLBJKB_00852 0.70 -1.9 885,721 - OHPLBJKB_00852 0.70 -0.3 885,727 - OHPLBJKB_00852 0.70 +1.1 885,727 - OHPLBJKB_00852 0.70 -0.0 885,752 + OHPLBJKB_00852 0.72 +1.1 885,834 + OHPLBJKB_00852 0.77 -0.3 886,066 - -0.8 886,117 + +1.5 886,117 + +2.1 886,117 + -0.4 886,117 + +0.4 886,117 + -0.4 886,117 + -0.2 886,119 + +0.5 886,120 - -1.1 886,123 + -1.2 886,123 + +0.1 886,124 - +0.5 886,124 - +0.9 886,124 - +1.8 887,478 - +0.1
Or see this region's nucleotide sequence