Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00820

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00817 and OHPLBJKB_00818 are separated by 242 nucleotidesOHPLBJKB_00818 and OHPLBJKB_00819 overlap by 20 nucleotidesOHPLBJKB_00819 and OHPLBJKB_00820 are separated by 39 nucleotidesOHPLBJKB_00820 and OHPLBJKB_00821 are separated by 111 nucleotides OHPLBJKB_00817: OHPLBJKB_00817 - tRNA-modifying protein YgfZ, at 841,095 to 842,075 _00817 OHPLBJKB_00818: OHPLBJKB_00818 - FAD assembly factor SdhE, at 842,318 to 842,584 _00818 OHPLBJKB_00819: OHPLBJKB_00819 - Inner membrane protein YgfX, at 842,565 to 842,972 _00819 OHPLBJKB_00820: OHPLBJKB_00820 - Flavodoxin 2, at 843,012 to 843,533 _00820 OHPLBJKB_00821: OHPLBJKB_00821 - Tyrosine recombinase XerD, at 843,645 to 844,541 _00821 Position (kb) 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 842.079 kb on - strandat 842.079 kb on - strandat 842.079 kb on - strandat 842.079 kb on - strandat 842.104 kb on - strandat 842.114 kb on - strandat 842.119 kb on + strandat 842.119 kb on + strandat 842.129 kb on - strandat 842.129 kb on - strandat 842.129 kb on - strandat 842.218 kb on - strandat 842.247 kb on + strandat 842.248 kb on - strandat 842.277 kb on + strandat 842.277 kb on + strandat 842.277 kb on + strandat 842.278 kb on - strandat 842.278 kb on - strandat 842.278 kb on - strandat 842.411 kb on + strand, within OHPLBJKB_00818at 842.421 kb on + strand, within OHPLBJKB_00818at 842.482 kb on + strand, within OHPLBJKB_00818at 842.483 kb on - strand, within OHPLBJKB_00818at 842.654 kb on - strand, within OHPLBJKB_00819at 842.654 kb on - strand, within OHPLBJKB_00819at 842.676 kb on + strand, within OHPLBJKB_00819at 842.698 kb on + strand, within OHPLBJKB_00819at 842.698 kb on + strand, within OHPLBJKB_00819at 842.699 kb on - strand, within OHPLBJKB_00819at 842.699 kb on - strand, within OHPLBJKB_00819at 842.744 kb on + strand, within OHPLBJKB_00819at 842.744 kb on + strand, within OHPLBJKB_00819at 842.838 kb on - strand, within OHPLBJKB_00819at 842.838 kb on - strand, within OHPLBJKB_00819at 842.860 kb on + strand, within OHPLBJKB_00819at 842.860 kb on + strand, within OHPLBJKB_00819at 842.890 kb on + strand, within OHPLBJKB_00819at 842.890 kb on + strand, within OHPLBJKB_00819at 842.890 kb on + strand, within OHPLBJKB_00819at 842.891 kb on - strand, within OHPLBJKB_00819at 842.989 kb on + strandat 842.989 kb on + strandat 842.990 kb on - strandat 842.990 kb on - strandat 842.990 kb on - strandat 843.019 kb on + strandat 843.085 kb on + strand, within OHPLBJKB_00820at 843.085 kb on + strand, within OHPLBJKB_00820at 843.086 kb on - strand, within OHPLBJKB_00820at 843.086 kb on - strand, within OHPLBJKB_00820at 843.093 kb on - strand, within OHPLBJKB_00820at 843.163 kb on + strand, within OHPLBJKB_00820at 843.228 kb on - strand, within OHPLBJKB_00820at 843.280 kb on + strand, within OHPLBJKB_00820at 843.296 kb on + strand, within OHPLBJKB_00820at 843.397 kb on + strand, within OHPLBJKB_00820at 843.398 kb on - strand, within OHPLBJKB_00820at 843.398 kb on - strand, within OHPLBJKB_00820at 843.398 kb on - strand, within OHPLBJKB_00820at 843.408 kb on + strand, within OHPLBJKB_00820at 843.408 kb on + strand, within OHPLBJKB_00820at 843.434 kb on + strand, within OHPLBJKB_00820at 843.434 kb on + strand, within OHPLBJKB_00820at 843.435 kb on - strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.438 kb on + strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.439 kb on - strand, within OHPLBJKB_00820at 843.496 kb on + strandat 843.496 kb on + strandat 843.496 kb on + strandat 843.497 kb on - strandat 843.533 kb on + strandat 843.538 kb on + strandat 843.538 kb on + strandat 843.538 kb on + strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.539 kb on - strandat 843.571 kb on + strandat 843.571 kb on + strandat 843.572 kb on - strandat 843.572 kb on - strandat 843.572 kb on - strandat 843.572 kb on - strandat 843.576 kb on + strandat 843.576 kb on + strandat 843.576 kb on + strandat 843.604 kb on + strandat 843.605 kb on - strandat 843.611 kb on + strandat 843.846 kb on - strand, within OHPLBJKB_00821at 843.982 kb on + strand, within OHPLBJKB_00821at 844.006 kb on + strand, within OHPLBJKB_00821at 844.006 kb on + strand, within OHPLBJKB_00821at 844.042 kb on + strand, within OHPLBJKB_00821at 844.042 kb on + strand, within OHPLBJKB_00821at 844.071 kb on + strand, within OHPLBJKB_00821at 844.071 kb on + strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.121 kb on + strand, within OHPLBJKB_00821at 844.219 kb on - strand, within OHPLBJKB_00821at 844.325 kb on + strand, within OHPLBJKB_00821at 844.326 kb on - strand, within OHPLBJKB_00821at 844.332 kb on + strand, within OHPLBJKB_00821at 844.405 kb on + strand, within OHPLBJKB_00821at 844.445 kb on - strand, within OHPLBJKB_00821at 844.481 kb on + strandat 844.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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842,079 - -1.8
842,079 - -0.5
842,079 - -0.6
842,079 - -1.1
842,104 - +0.5
842,114 - -1.1
842,119 + -1.4
842,119 + -0.9
842,129 - +1.4
842,129 - -0.2
842,129 - -1.6
842,218 - -0.6
842,247 + +0.5
842,248 - +0.4
842,277 + -2.8
842,277 + +0.1
842,277 + -0.4
842,278 - -1.9
842,278 - -1.0
842,278 - -0.8
842,411 + OHPLBJKB_00818 0.35 +0.5
842,421 + OHPLBJKB_00818 0.39 -0.2
842,482 + OHPLBJKB_00818 0.61 +0.2
842,483 - OHPLBJKB_00818 0.62 -0.7
842,654 - OHPLBJKB_00819 0.22 +0.5
842,654 - OHPLBJKB_00819 0.22 +1.1
842,676 + OHPLBJKB_00819 0.27 -1.4
842,698 + OHPLBJKB_00819 0.33 -0.6
842,698 + OHPLBJKB_00819 0.33 +0.1
842,699 - OHPLBJKB_00819 0.33 -0.4
842,699 - OHPLBJKB_00819 0.33 -0.5
842,744 + OHPLBJKB_00819 0.44 -0.7
842,744 + OHPLBJKB_00819 0.44 -0.3
842,838 - OHPLBJKB_00819 0.67 +0.1
842,838 - OHPLBJKB_00819 0.67 -1.5
842,860 + OHPLBJKB_00819 0.72 -0.1
842,860 + OHPLBJKB_00819 0.72 -2.1
842,890 + OHPLBJKB_00819 0.80 -0.3
842,890 + OHPLBJKB_00819 0.80 -0.8
842,890 + OHPLBJKB_00819 0.80 +0.3
842,891 - OHPLBJKB_00819 0.80 +1.1
842,989 + +0.8
842,989 + +0.8
842,990 - -1.9
842,990 - -1.1
842,990 - +0.1
843,019 + +0.3
843,085 + OHPLBJKB_00820 0.14 +0.1
843,085 + OHPLBJKB_00820 0.14 +0.7
843,086 - OHPLBJKB_00820 0.14 -1.1
843,086 - OHPLBJKB_00820 0.14 +0.3
843,093 - OHPLBJKB_00820 0.16 +0.1
843,163 + OHPLBJKB_00820 0.29 +1.1
843,228 - OHPLBJKB_00820 0.41 -1.1
843,280 + OHPLBJKB_00820 0.51 +1.1
843,296 + OHPLBJKB_00820 0.54 -1.2
843,397 + OHPLBJKB_00820 0.74 -0.7
843,398 - OHPLBJKB_00820 0.74 +0.1
843,398 - OHPLBJKB_00820 0.74 +0.5
843,398 - OHPLBJKB_00820 0.74 -1.1
843,408 + OHPLBJKB_00820 0.76 +0.5
843,408 + OHPLBJKB_00820 0.76 +2.1
843,434 + OHPLBJKB_00820 0.81 -1.4
843,434 + OHPLBJKB_00820 0.81 +0.5
843,435 - OHPLBJKB_00820 0.81 +0.1
843,438 + OHPLBJKB_00820 0.82 +0.4
843,438 + OHPLBJKB_00820 0.82 -1.7
843,438 + OHPLBJKB_00820 0.82 -1.6
843,438 + OHPLBJKB_00820 0.82 -0.1
843,438 + OHPLBJKB_00820 0.82 +0.1
843,438 + OHPLBJKB_00820 0.82 +0.1
843,438 + OHPLBJKB_00820 0.82 +1.4
843,438 + OHPLBJKB_00820 0.82 -1.1
843,438 + OHPLBJKB_00820 0.82 -1.5
843,438 + OHPLBJKB_00820 0.82 -0.9
843,439 - OHPLBJKB_00820 0.82 -0.0
843,439 - OHPLBJKB_00820 0.82 +0.1
843,439 - OHPLBJKB_00820 0.82 +0.1
843,439 - OHPLBJKB_00820 0.82 -0.9
843,439 - OHPLBJKB_00820 0.82 +0.5
843,439 - OHPLBJKB_00820 0.82 +0.5
843,496 + -1.8
843,496 + +2.1
843,496 + +1.1
843,497 - -0.5
843,533 + +1.1
843,538 + -0.2
843,538 + +0.3
843,538 + -1.8
843,539 - +0.2
843,539 - +0.4
843,539 - -1.2
843,539 - +0.5
843,539 - +0.5
843,539 - -0.7
843,539 - +0.2
843,539 - +1.3
843,571 + -1.0
843,571 + -0.2
843,572 - +0.5
843,572 - +0.1
843,572 - -0.7
843,572 - +0.5
843,576 + -0.4
843,576 + +0.4
843,576 + -0.2
843,604 + -0.0
843,605 - +0.5
843,611 + +0.1
843,846 - OHPLBJKB_00821 0.22 -1.5
843,982 + OHPLBJKB_00821 0.38 +1.1
844,006 + OHPLBJKB_00821 0.40 -0.2
844,006 + OHPLBJKB_00821 0.40 +0.1
844,042 + OHPLBJKB_00821 0.44 -1.5
844,042 + OHPLBJKB_00821 0.44 +0.1
844,071 + OHPLBJKB_00821 0.47 -0.2
844,071 + OHPLBJKB_00821 0.47 -0.9
844,072 - OHPLBJKB_00821 0.48 +0.1
844,072 - OHPLBJKB_00821 0.48 +0.1
844,072 - OHPLBJKB_00821 0.48 -0.2
844,072 - OHPLBJKB_00821 0.48 -0.1
844,121 + OHPLBJKB_00821 0.53 +0.5
844,219 - OHPLBJKB_00821 0.64 -0.2
844,325 + OHPLBJKB_00821 0.76 +0.1
844,326 - OHPLBJKB_00821 0.76 -1.1
844,332 + OHPLBJKB_00821 0.77 -0.2
844,405 + OHPLBJKB_00821 0.85 +0.5
844,445 - OHPLBJKB_00821 0.89 -1.1
844,481 + -1.6
844,482 - +2.1

Or see this region's nucleotide sequence