Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00758

Experiment: K5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00756 and OHPLBJKB_00757 overlap by 1 nucleotidesOHPLBJKB_00757 and OHPLBJKB_00758 are separated by 183 nucleotidesOHPLBJKB_00758 and OHPLBJKB_00759 are separated by 175 nucleotides OHPLBJKB_00756: OHPLBJKB_00756 - tRNA (guanine-N(7)-)-methyltransferase, at 779,131 to 779,850 _00756 OHPLBJKB_00757: OHPLBJKB_00757 - hypothetical protein, at 779,850 to 780,176 _00757 OHPLBJKB_00758: OHPLBJKB_00758 - hypothetical protein, at 780,360 to 781,079 _00758 OHPLBJKB_00759: OHPLBJKB_00759 - L-asparaginase 2, at 781,255 to 782,301 _00759 Position (kb) 780 781 782Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 779.465 kb on + strand, within OHPLBJKB_00756at 779.465 kb on + strand, within OHPLBJKB_00756at 779.466 kb on - strand, within OHPLBJKB_00756at 779.512 kb on - strand, within OHPLBJKB_00756at 779.584 kb on - strand, within OHPLBJKB_00756at 779.587 kb on - strand, within OHPLBJKB_00756at 779.596 kb on - strand, within OHPLBJKB_00756at 779.601 kb on - strand, within OHPLBJKB_00756at 779.625 kb on - strand, within OHPLBJKB_00756at 779.625 kb on - strand, within OHPLBJKB_00756at 779.658 kb on + strand, within OHPLBJKB_00756at 779.691 kb on + strand, within OHPLBJKB_00756at 779.691 kb on + strand, within OHPLBJKB_00756at 779.691 kb on + strand, within OHPLBJKB_00756at 779.691 kb on + strand, within OHPLBJKB_00756at 779.691 kb on + strand, within OHPLBJKB_00756at 779.691 kb on + strand, within OHPLBJKB_00756at 779.692 kb on - strand, within OHPLBJKB_00756at 779.692 kb on - strand, within OHPLBJKB_00756at 779.692 kb on - strand, within OHPLBJKB_00756at 779.692 kb on - strand, within OHPLBJKB_00756at 779.692 kb on - strand, within OHPLBJKB_00756at 779.692 kb on - strand, within OHPLBJKB_00756at 779.692 kb on - strand, within OHPLBJKB_00756at 779.692 kb on - strand, within OHPLBJKB_00756at 779.692 kb on - strand, within OHPLBJKB_00756at 779.713 kb on - strand, within OHPLBJKB_00756at 779.713 kb on - strand, within OHPLBJKB_00756at 779.713 kb on - strand, within OHPLBJKB_00756at 779.724 kb on + strand, within OHPLBJKB_00756at 779.724 kb on + strand, within OHPLBJKB_00756at 779.725 kb on - strand, within OHPLBJKB_00756at 779.725 kb on - strand, within OHPLBJKB_00756at 779.725 kb on - strand, within OHPLBJKB_00756at 779.750 kb on - strand, within OHPLBJKB_00756at 779.750 kb on - strand, within OHPLBJKB_00756at 779.750 kb on - strand, within OHPLBJKB_00756at 779.828 kb on + strandat 779.828 kb on + strandat 779.828 kb on + strandat 779.828 kb on + strandat 779.828 kb on + strandat 779.829 kb on - strandat 779.829 kb on - strandat 779.848 kb on + strandat 779.849 kb on - strandat 779.849 kb on - strandat 779.864 kb on + strandat 779.945 kb on + strand, within OHPLBJKB_00757at 779.945 kb on + strand, within OHPLBJKB_00757at 779.945 kb on + strand, within OHPLBJKB_00757at 779.946 kb on - strand, within OHPLBJKB_00757at 779.946 kb on - strand, within OHPLBJKB_00757at 779.966 kb on + strand, within OHPLBJKB_00757at 779.966 kb on + strand, within OHPLBJKB_00757at 779.985 kb on - strand, within OHPLBJKB_00757at 779.985 kb on - strand, within OHPLBJKB_00757at 780.107 kb on + strand, within OHPLBJKB_00757at 780.107 kb on + strand, within OHPLBJKB_00757at 780.108 kb on - strand, within OHPLBJKB_00757at 780.108 kb on - strand, within OHPLBJKB_00757at 780.139 kb on + strand, within OHPLBJKB_00757at 780.139 kb on + strand, within OHPLBJKB_00757at 780.175 kb on - strandat 780.175 kb on - strandat 780.184 kb on + strandat 780.185 kb on - strandat 780.226 kb on + strandat 780.256 kb on - strandat 780.359 kb on + strandat 780.359 kb on + strandat 780.359 kb on + strandat 780.360 kb on - strandat 780.360 kb on - strandat 780.360 kb on - strandat 780.360 kb on - strandat 780.360 kb on - strandat 780.360 kb on - strandat 780.360 kb on - strandat 780.360 kb on - strandat 780.360 kb on - strandat 780.423 kb on + strandat 780.424 kb on - strandat 780.531 kb on + strand, within OHPLBJKB_00758at 780.531 kb on + strand, within OHPLBJKB_00758at 780.531 kb on + strand, within OHPLBJKB_00758at 780.531 kb on + strand, within OHPLBJKB_00758at 780.531 kb on + strand, within OHPLBJKB_00758at 780.531 kb on + strand, within OHPLBJKB_00758at 780.532 kb on - strand, within OHPLBJKB_00758at 780.533 kb on + strand, within OHPLBJKB_00758at 780.586 kb on - strand, within OHPLBJKB_00758at 780.598 kb on + strand, within OHPLBJKB_00758at 780.598 kb on + strand, within OHPLBJKB_00758at 780.668 kb on + strand, within OHPLBJKB_00758at 780.675 kb on - strand, within OHPLBJKB_00758at 780.795 kb on + strand, within OHPLBJKB_00758at 780.797 kb on + strand, within OHPLBJKB_00758at 780.797 kb on + strand, within OHPLBJKB_00758at 780.797 kb on + strand, within OHPLBJKB_00758at 780.798 kb on - strand, within OHPLBJKB_00758at 780.835 kb on + strand, within OHPLBJKB_00758at 780.836 kb on - strand, within OHPLBJKB_00758at 780.862 kb on + strand, within OHPLBJKB_00758at 780.922 kb on + strand, within OHPLBJKB_00758at 780.923 kb on - strand, within OHPLBJKB_00758at 781.077 kb on + strandat 781.077 kb on + strandat 781.078 kb on - strandat 781.078 kb on - strandat 781.090 kb on + strandat 781.100 kb on + strandat 781.101 kb on - strandat 781.154 kb on + strandat 781.154 kb on + strandat 781.155 kb on - strandat 781.155 kb on - strandat 781.167 kb on + strandat 781.169 kb on + strandat 781.239 kb on + strandat 781.239 kb on + strandat 781.303 kb on - strandat 781.329 kb on + strandat 781.330 kb on - strandat 781.340 kb on + strandat 781.389 kb on + strand, within OHPLBJKB_00759at 781.390 kb on - strand, within OHPLBJKB_00759at 781.393 kb on + strand, within OHPLBJKB_00759at 781.393 kb on + strand, within OHPLBJKB_00759at 781.393 kb on + strand, within OHPLBJKB_00759at 781.393 kb on + strand, within OHPLBJKB_00759at 781.394 kb on - strand, within OHPLBJKB_00759at 781.509 kb on + strand, within OHPLBJKB_00759at 781.540 kb on - strand, within OHPLBJKB_00759at 781.609 kb on + strand, within OHPLBJKB_00759at 781.610 kb on - strand, within OHPLBJKB_00759at 781.708 kb on + strand, within OHPLBJKB_00759at 781.709 kb on - strand, within OHPLBJKB_00759at 781.709 kb on - strand, within OHPLBJKB_00759at 781.709 kb on - strand, within OHPLBJKB_00759at 781.711 kb on - strand, within OHPLBJKB_00759at 781.735 kb on - strand, within OHPLBJKB_00759at 781.823 kb on + strand, within OHPLBJKB_00759at 781.846 kb on + strand, within OHPLBJKB_00759at 781.846 kb on + strand, within OHPLBJKB_00759at 781.846 kb on + strand, within OHPLBJKB_00759at 781.847 kb on - strand, within OHPLBJKB_00759at 781.847 kb on - strand, within OHPLBJKB_00759at 781.861 kb on + strand, within OHPLBJKB_00759at 781.862 kb on - strand, within OHPLBJKB_00759at 781.875 kb on + strand, within OHPLBJKB_00759at 781.894 kb on - strand, within OHPLBJKB_00759at 781.905 kb on + strand, within OHPLBJKB_00759at 781.905 kb on + strand, within OHPLBJKB_00759at 781.906 kb on - strand, within OHPLBJKB_00759at 781.906 kb on - strand, within OHPLBJKB_00759at 781.906 kb on - strand, within OHPLBJKB_00759at 781.906 kb on - strand, within OHPLBJKB_00759at 781.972 kb on + strand, within OHPLBJKB_00759at 781.972 kb on + strand, within OHPLBJKB_00759at 781.972 kb on + strand, within OHPLBJKB_00759at 781.972 kb on + strand, within OHPLBJKB_00759at 781.973 kb on - strand, within OHPLBJKB_00759at 781.973 kb on - strand, within OHPLBJKB_00759at 781.974 kb on + strand, within OHPLBJKB_00759at 781.974 kb on + strand, within OHPLBJKB_00759at 781.975 kb on - strand, within OHPLBJKB_00759at 781.978 kb on + strand, within OHPLBJKB_00759at 781.978 kb on + strand, within OHPLBJKB_00759at 781.979 kb on - strand, within OHPLBJKB_00759at 781.979 kb on - strand, within OHPLBJKB_00759at 781.979 kb on - strand, within OHPLBJKB_00759at 781.979 kb on - strand, within OHPLBJKB_00759at 782.015 kb on + strand, within OHPLBJKB_00759at 782.015 kb on + strand, within OHPLBJKB_00759at 782.015 kb on + strand, within OHPLBJKB_00759at 782.016 kb on - strand, within OHPLBJKB_00759at 782.016 kb on - strand, within OHPLBJKB_00759at 782.061 kb on + strand, within OHPLBJKB_00759at 782.062 kb on - strand, within OHPLBJKB_00759at 782.069 kb on - strand, within OHPLBJKB_00759at 782.071 kb on - strand, within OHPLBJKB_00759

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K5
remove
779,465 + OHPLBJKB_00756 0.46 -2.5
779,465 + OHPLBJKB_00756 0.46 -1.9
779,466 - OHPLBJKB_00756 0.47 +0.3
779,512 - OHPLBJKB_00756 0.53 +0.0
779,584 - OHPLBJKB_00756 0.63 -0.6
779,587 - OHPLBJKB_00756 0.63 -1.5
779,596 - OHPLBJKB_00756 0.65 +2.1
779,601 - OHPLBJKB_00756 0.65 +1.1
779,625 - OHPLBJKB_00756 0.69 +1.0
779,625 - OHPLBJKB_00756 0.69 +0.3
779,658 + OHPLBJKB_00756 0.73 -2.1
779,691 + OHPLBJKB_00756 0.78 +0.5
779,691 + OHPLBJKB_00756 0.78 +1.5
779,691 + OHPLBJKB_00756 0.78 -0.6
779,691 + OHPLBJKB_00756 0.78 -1.6
779,691 + OHPLBJKB_00756 0.78 +0.5
779,691 + OHPLBJKB_00756 0.78 +0.2
779,692 - OHPLBJKB_00756 0.78 -0.0
779,692 - OHPLBJKB_00756 0.78 +0.5
779,692 - OHPLBJKB_00756 0.78 +0.8
779,692 - OHPLBJKB_00756 0.78 +1.5
779,692 - OHPLBJKB_00756 0.78 -0.2
779,692 - OHPLBJKB_00756 0.78 -0.0
779,692 - OHPLBJKB_00756 0.78 +0.5
779,692 - OHPLBJKB_00756 0.78 -0.5
779,692 - OHPLBJKB_00756 0.78 +0.7
779,713 - OHPLBJKB_00756 0.81 -0.9
779,713 - OHPLBJKB_00756 0.81 +1.0
779,713 - OHPLBJKB_00756 0.81 -1.6
779,724 + OHPLBJKB_00756 0.82 +0.0
779,724 + OHPLBJKB_00756 0.82 +1.5
779,725 - OHPLBJKB_00756 0.82 +1.0
779,725 - OHPLBJKB_00756 0.82 +0.6
779,725 - OHPLBJKB_00756 0.82 +0.1
779,750 - OHPLBJKB_00756 0.86 -1.9
779,750 - OHPLBJKB_00756 0.86 +0.7
779,750 - OHPLBJKB_00756 0.86 +0.5
779,828 + -0.2
779,828 + +0.5
779,828 + -0.2
779,828 + -0.5
779,828 + +0.3
779,829 - -0.5
779,829 - +0.5
779,848 + -1.3
779,849 - -1.3
779,849 - -0.9
779,864 + -1.4
779,945 + OHPLBJKB_00757 0.29 +2.1
779,945 + OHPLBJKB_00757 0.29 -2.8
779,945 + OHPLBJKB_00757 0.29 -1.0
779,946 - OHPLBJKB_00757 0.29 -2.3
779,946 - OHPLBJKB_00757 0.29 -1.7
779,966 + OHPLBJKB_00757 0.35 -0.9
779,966 + OHPLBJKB_00757 0.35 -0.6
779,985 - OHPLBJKB_00757 0.41 -0.2
779,985 - OHPLBJKB_00757 0.41 +0.0
780,107 + OHPLBJKB_00757 0.79 +0.1
780,107 + OHPLBJKB_00757 0.79 -0.7
780,108 - OHPLBJKB_00757 0.79 +1.8
780,108 - OHPLBJKB_00757 0.79 -0.0
780,139 + OHPLBJKB_00757 0.88 +1.1
780,139 + OHPLBJKB_00757 0.88 +0.0
780,175 - +0.6
780,175 - -0.1
780,184 + -1.0
780,185 - -0.1
780,226 + +0.9
780,256 - +0.5
780,359 + +0.0
780,359 + +0.3
780,359 + -1.0
780,360 - +2.1
780,360 - +0.8
780,360 - -0.2
780,360 - +0.3
780,360 - +0.6
780,360 - +0.7
780,360 - +0.2
780,360 - -1.0
780,360 - +0.1
780,423 + -1.4
780,424 - -0.2
780,531 + OHPLBJKB_00758 0.24 -0.1
780,531 + OHPLBJKB_00758 0.24 +1.1
780,531 + OHPLBJKB_00758 0.24 +0.7
780,531 + OHPLBJKB_00758 0.24 +0.4
780,531 + OHPLBJKB_00758 0.24 +0.1
780,531 + OHPLBJKB_00758 0.24 -0.3
780,532 - OHPLBJKB_00758 0.24 +0.6
780,533 + OHPLBJKB_00758 0.24 +0.7
780,586 - OHPLBJKB_00758 0.31 -0.7
780,598 + OHPLBJKB_00758 0.33 -1.5
780,598 + OHPLBJKB_00758 0.33 -0.0
780,668 + OHPLBJKB_00758 0.43 +0.1
780,675 - OHPLBJKB_00758 0.44 +2.1
780,795 + OHPLBJKB_00758 0.60 -0.0
780,797 + OHPLBJKB_00758 0.61 +0.4
780,797 + OHPLBJKB_00758 0.61 -0.7
780,797 + OHPLBJKB_00758 0.61 +0.4
780,798 - OHPLBJKB_00758 0.61 -0.7
780,835 + OHPLBJKB_00758 0.66 +0.1
780,836 - OHPLBJKB_00758 0.66 +0.9
780,862 + OHPLBJKB_00758 0.70 +1.1
780,922 + OHPLBJKB_00758 0.78 +0.8
780,923 - OHPLBJKB_00758 0.78 -0.9
781,077 + -0.9
781,077 + -0.3
781,078 - -0.3
781,078 - +0.8
781,090 + +0.6
781,100 + +0.3
781,101 - -0.3
781,154 + -0.2
781,154 + +0.1
781,155 - -0.0
781,155 - +1.0
781,167 + -1.9
781,169 + +1.4
781,239 + +0.1
781,239 + +0.5
781,303 - +0.5
781,329 + -1.5
781,330 - +0.4
781,340 + -0.9
781,389 + OHPLBJKB_00759 0.13 +0.4
781,390 - OHPLBJKB_00759 0.13 +0.5
781,393 + OHPLBJKB_00759 0.13 +0.2
781,393 + OHPLBJKB_00759 0.13 +0.1
781,393 + OHPLBJKB_00759 0.13 -0.5
781,393 + OHPLBJKB_00759 0.13 +1.1
781,394 - OHPLBJKB_00759 0.13 +1.9
781,509 + OHPLBJKB_00759 0.24 -1.9
781,540 - OHPLBJKB_00759 0.27 -0.9
781,609 + OHPLBJKB_00759 0.34 -0.1
781,610 - OHPLBJKB_00759 0.34 -0.5
781,708 + OHPLBJKB_00759 0.43 -0.1
781,709 - OHPLBJKB_00759 0.43 +1.1
781,709 - OHPLBJKB_00759 0.43 -1.3
781,709 - OHPLBJKB_00759 0.43 +0.5
781,711 - OHPLBJKB_00759 0.44 +0.9
781,735 - OHPLBJKB_00759 0.46 +0.0
781,823 + OHPLBJKB_00759 0.54 -0.7
781,846 + OHPLBJKB_00759 0.56 -0.3
781,846 + OHPLBJKB_00759 0.56 +0.7
781,846 + OHPLBJKB_00759 0.56 -0.3
781,847 - OHPLBJKB_00759 0.57 -0.5
781,847 - OHPLBJKB_00759 0.57 -1.3
781,861 + OHPLBJKB_00759 0.58 -0.3
781,862 - OHPLBJKB_00759 0.58 +0.2
781,875 + OHPLBJKB_00759 0.59 -1.5
781,894 - OHPLBJKB_00759 0.61 -0.2
781,905 + OHPLBJKB_00759 0.62 -0.5
781,905 + OHPLBJKB_00759 0.62 +1.1
781,906 - OHPLBJKB_00759 0.62 +0.4
781,906 - OHPLBJKB_00759 0.62 -1.7
781,906 - OHPLBJKB_00759 0.62 +0.9
781,906 - OHPLBJKB_00759 0.62 -0.8
781,972 + OHPLBJKB_00759 0.68 +0.6
781,972 + OHPLBJKB_00759 0.68 -1.0
781,972 + OHPLBJKB_00759 0.68 -0.1
781,972 + OHPLBJKB_00759 0.68 -1.8
781,973 - OHPLBJKB_00759 0.69 +0.4
781,973 - OHPLBJKB_00759 0.69 +0.7
781,974 + OHPLBJKB_00759 0.69 -0.9
781,974 + OHPLBJKB_00759 0.69 +1.4
781,975 - OHPLBJKB_00759 0.69 -1.7
781,978 + OHPLBJKB_00759 0.69 -0.5
781,978 + OHPLBJKB_00759 0.69 -0.9
781,979 - OHPLBJKB_00759 0.69 -0.2
781,979 - OHPLBJKB_00759 0.69 -1.6
781,979 - OHPLBJKB_00759 0.69 +0.6
781,979 - OHPLBJKB_00759 0.69 +1.0
782,015 + OHPLBJKB_00759 0.73 -0.6
782,015 + OHPLBJKB_00759 0.73 +0.5
782,015 + OHPLBJKB_00759 0.73 +0.6
782,016 - OHPLBJKB_00759 0.73 +0.3
782,016 - OHPLBJKB_00759 0.73 +0.8
782,061 + OHPLBJKB_00759 0.77 +0.8
782,062 - OHPLBJKB_00759 0.77 +0.9
782,069 - OHPLBJKB_00759 0.78 -0.0
782,071 - OHPLBJKB_00759 0.78 -0.1

Or see this region's nucleotide sequence