Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00718

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00716 and OHPLBJKB_00717 overlap by 1 nucleotidesOHPLBJKB_00717 and OHPLBJKB_00718 are separated by 11 nucleotidesOHPLBJKB_00718 and OHPLBJKB_00719 are separated by 30 nucleotides OHPLBJKB_00716: OHPLBJKB_00716 - hypothetical protein, at 733,663 to 735,012 _00716 OHPLBJKB_00717: OHPLBJKB_00717 - hypothetical protein, at 735,012 to 735,836 _00717 OHPLBJKB_00718: OHPLBJKB_00718 - putative protein YtfJ, at 735,848 to 736,408 _00718 OHPLBJKB_00719: OHPLBJKB_00719 - hypothetical protein, at 736,439 to 737,509 _00719 Position (kb) 735 736 737Strain fitness (log2 ratio) -2 -1 0 1 2at 734.852 kb on + strand, within OHPLBJKB_00716at 734.853 kb on - strand, within OHPLBJKB_00716at 734.943 kb on - strandat 734.955 kb on - strandat 734.986 kb on + strandat 734.986 kb on + strandat 734.987 kb on - strandat 734.987 kb on - strandat 734.987 kb on - strandat 734.989 kb on - strandat 735.053 kb on - strandat 735.110 kb on + strand, within OHPLBJKB_00717at 735.111 kb on - strand, within OHPLBJKB_00717at 735.118 kb on + strand, within OHPLBJKB_00717at 735.125 kb on + strand, within OHPLBJKB_00717at 735.125 kb on + strand, within OHPLBJKB_00717at 735.125 kb on + strand, within OHPLBJKB_00717at 735.146 kb on + strand, within OHPLBJKB_00717at 735.151 kb on - strand, within OHPLBJKB_00717at 735.151 kb on - strand, within OHPLBJKB_00717at 735.157 kb on + strand, within OHPLBJKB_00717at 735.200 kb on - strand, within OHPLBJKB_00717at 735.263 kb on + strand, within OHPLBJKB_00717at 735.263 kb on + strand, within OHPLBJKB_00717at 735.264 kb on - strand, within OHPLBJKB_00717at 735.267 kb on + strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.282 kb on + strand, within OHPLBJKB_00717at 735.312 kb on + strand, within OHPLBJKB_00717at 735.316 kb on + strand, within OHPLBJKB_00717at 735.317 kb on - strand, within OHPLBJKB_00717at 735.317 kb on - strand, within OHPLBJKB_00717at 735.404 kb on + strand, within OHPLBJKB_00717at 735.404 kb on + strand, within OHPLBJKB_00717at 735.438 kb on + strand, within OHPLBJKB_00717at 735.439 kb on - strand, within OHPLBJKB_00717at 735.443 kb on - strand, within OHPLBJKB_00717at 735.471 kb on + strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.502 kb on + strand, within OHPLBJKB_00717at 735.503 kb on - strand, within OHPLBJKB_00717at 735.553 kb on + strand, within OHPLBJKB_00717at 735.572 kb on - strand, within OHPLBJKB_00717at 735.633 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.659 kb on + strand, within OHPLBJKB_00717at 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.763 kb on - strandat 735.806 kb on - strandat 735.833 kb on - strandat 735.878 kb on - strandat 735.944 kb on + strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.946 kb on + strand, within OHPLBJKB_00718at 735.947 kb on - strand, within OHPLBJKB_00718at 736.060 kb on + strand, within OHPLBJKB_00718at 736.093 kb on + strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.182 kb on - strand, within OHPLBJKB_00718at 736.182 kb on - strand, within OHPLBJKB_00718at 736.365 kb on + strandat 736.365 kb on + strandat 736.365 kb on + strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.457 kb on + strandat 736.457 kb on + strandat 736.458 kb on - strandat 736.458 kb on - strandat 736.527 kb on - strandat 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.570 kb on - strand, within OHPLBJKB_00719at 736.570 kb on - strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.647 kb on - strand, within OHPLBJKB_00719at 736.647 kb on - strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.737 kb on - strand, within OHPLBJKB_00719at 736.737 kb on - strand, within OHPLBJKB_00719at 736.768 kb on - strand, within OHPLBJKB_00719at 736.772 kb on - strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.815 kb on - strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.827 kb on - strand, within OHPLBJKB_00719at 736.888 kb on + strand, within OHPLBJKB_00719at 736.894 kb on + strand, within OHPLBJKB_00719at 736.895 kb on - strand, within OHPLBJKB_00719at 736.942 kb on + strand, within OHPLBJKB_00719at 736.942 kb on + strand, within OHPLBJKB_00719at 736.943 kb on - strand, within OHPLBJKB_00719at 736.967 kb on + strand, within OHPLBJKB_00719at 736.975 kb on + strand, within OHPLBJKB_00719at 736.975 kb on + strand, within OHPLBJKB_00719at 736.976 kb on - strand, within OHPLBJKB_00719at 736.976 kb on - strand, within OHPLBJKB_00719at 737.050 kb on + strand, within OHPLBJKB_00719at 737.050 kb on + strand, within OHPLBJKB_00719at 737.051 kb on - strand, within OHPLBJKB_00719at 737.051 kb on - strand, within OHPLBJKB_00719at 737.051 kb on - strand, within OHPLBJKB_00719at 737.114 kb on + strand, within OHPLBJKB_00719at 737.114 kb on + strand, within OHPLBJKB_00719at 737.130 kb on + strand, within OHPLBJKB_00719at 737.130 kb on + strand, within OHPLBJKB_00719at 737.130 kb on + strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.328 kb on + strand, within OHPLBJKB_00719

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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734,852 + OHPLBJKB_00716 0.88 +1.5
734,853 - OHPLBJKB_00716 0.88 -0.2
734,943 - +1.9
734,955 - +1.1
734,986 + +0.8
734,986 + +0.7
734,987 - -0.4
734,987 - +0.3
734,987 - -1.4
734,989 - +0.3
735,053 - -0.8
735,110 + OHPLBJKB_00717 0.12 +0.1
735,111 - OHPLBJKB_00717 0.12 -1.8
735,118 + OHPLBJKB_00717 0.13 -1.3
735,125 + OHPLBJKB_00717 0.14 +0.3
735,125 + OHPLBJKB_00717 0.14 -0.2
735,125 + OHPLBJKB_00717 0.14 +1.0
735,146 + OHPLBJKB_00717 0.16 +1.0
735,151 - OHPLBJKB_00717 0.17 -1.8
735,151 - OHPLBJKB_00717 0.17 +0.5
735,157 + OHPLBJKB_00717 0.18 -2.5
735,200 - OHPLBJKB_00717 0.23 -2.0
735,263 + OHPLBJKB_00717 0.30 -1.2
735,263 + OHPLBJKB_00717 0.30 -0.4
735,264 - OHPLBJKB_00717 0.31 -0.2
735,267 + OHPLBJKB_00717 0.31 +1.3
735,268 - OHPLBJKB_00717 0.31 -0.6
735,268 - OHPLBJKB_00717 0.31 -0.5
735,268 - OHPLBJKB_00717 0.31 +1.6
735,268 - OHPLBJKB_00717 0.31 +0.3
735,282 + OHPLBJKB_00717 0.33 -1.4
735,312 + OHPLBJKB_00717 0.36 +0.1
735,316 + OHPLBJKB_00717 0.37 -2.0
735,317 - OHPLBJKB_00717 0.37 -0.6
735,317 - OHPLBJKB_00717 0.37 +0.1
735,404 + OHPLBJKB_00717 0.48 -2.0
735,404 + OHPLBJKB_00717 0.48 +0.3
735,438 + OHPLBJKB_00717 0.52 -0.0
735,439 - OHPLBJKB_00717 0.52 -0.6
735,443 - OHPLBJKB_00717 0.52 +0.4
735,471 + OHPLBJKB_00717 0.56 -0.0
735,472 - OHPLBJKB_00717 0.56 -2.0
735,472 - OHPLBJKB_00717 0.56 +0.6
735,502 + OHPLBJKB_00717 0.59 +0.1
735,503 - OHPLBJKB_00717 0.60 -0.3
735,553 + OHPLBJKB_00717 0.66 +0.1
735,572 - OHPLBJKB_00717 0.68 -0.5
735,633 - OHPLBJKB_00717 0.75 +0.6
735,638 - OHPLBJKB_00717 0.76 -0.6
735,638 - OHPLBJKB_00717 0.76 -0.8
735,659 + OHPLBJKB_00717 0.78 +0.9
735,762 + -1.1
735,762 + -1.3
735,762 + +1.7
735,762 + -1.7
735,763 - -0.1
735,806 - -0.3
735,833 - -0.2
735,878 - -1.7
735,944 + OHPLBJKB_00718 0.17 -0.7
735,945 - OHPLBJKB_00718 0.17 -0.5
735,945 - OHPLBJKB_00718 0.17 +0.1
735,945 - OHPLBJKB_00718 0.17 -0.2
735,945 - OHPLBJKB_00718 0.17 -1.2
735,945 - OHPLBJKB_00718 0.17 +0.4
735,946 + OHPLBJKB_00718 0.17 -1.2
735,947 - OHPLBJKB_00718 0.18 +0.4
736,060 + OHPLBJKB_00718 0.38 +1.4
736,093 + OHPLBJKB_00718 0.44 -1.8
736,094 - OHPLBJKB_00718 0.44 +0.1
736,094 - OHPLBJKB_00718 0.44 +0.9
736,094 - OHPLBJKB_00718 0.44 -0.4
736,181 + OHPLBJKB_00718 0.59 -0.5
736,181 + OHPLBJKB_00718 0.59 -1.1
736,181 + OHPLBJKB_00718 0.59 -0.3
736,182 - OHPLBJKB_00718 0.60 +0.4
736,182 - OHPLBJKB_00718 0.60 +0.1
736,365 + -0.7
736,365 + -0.4
736,365 + -1.2
736,366 - -1.7
736,366 - -0.4
736,366 - -1.7
736,366 - +0.6
736,457 + +1.0
736,457 + -1.4
736,458 - -0.3
736,458 - +0.9
736,527 - +1.0
736,569 + OHPLBJKB_00719 0.12 -1.2
736,569 + OHPLBJKB_00719 0.12 -0.2
736,569 + OHPLBJKB_00719 0.12 -0.2
736,569 + OHPLBJKB_00719 0.12 -0.6
736,570 - OHPLBJKB_00719 0.12 -1.2
736,570 - OHPLBJKB_00719 0.12 -0.1
736,646 + OHPLBJKB_00719 0.19 +0.3
736,646 + OHPLBJKB_00719 0.19 -0.9
736,646 + OHPLBJKB_00719 0.19 -0.2
736,646 + OHPLBJKB_00719 0.19 -0.2
736,646 + OHPLBJKB_00719 0.19 -2.4
736,646 + OHPLBJKB_00719 0.19 +0.5
736,646 + OHPLBJKB_00719 0.19 -0.2
736,646 + OHPLBJKB_00719 0.19 -1.0
736,647 - OHPLBJKB_00719 0.19 +0.3
736,647 - OHPLBJKB_00719 0.19 +0.1
736,679 + OHPLBJKB_00719 0.22 -1.8
736,679 + OHPLBJKB_00719 0.22 -1.2
736,679 + OHPLBJKB_00719 0.22 +0.3
736,679 + OHPLBJKB_00719 0.22 -0.1
736,680 - OHPLBJKB_00719 0.23 +0.3
736,680 - OHPLBJKB_00719 0.23 -0.3
736,680 - OHPLBJKB_00719 0.23 -1.2
736,737 - OHPLBJKB_00719 0.28 +0.3
736,737 - OHPLBJKB_00719 0.28 +0.3
736,768 - OHPLBJKB_00719 0.31 -0.7
736,772 - OHPLBJKB_00719 0.31 -0.4
736,796 + OHPLBJKB_00719 0.33 +1.7
736,796 + OHPLBJKB_00719 0.33 -0.4
736,796 + OHPLBJKB_00719 0.33 -1.5
736,796 + OHPLBJKB_00719 0.33 +0.6
736,797 - OHPLBJKB_00719 0.33 -0.6
736,797 - OHPLBJKB_00719 0.33 -1.8
736,797 - OHPLBJKB_00719 0.33 -0.3
736,797 - OHPLBJKB_00719 0.33 +0.3
736,797 - OHPLBJKB_00719 0.33 +0.8
736,797 - OHPLBJKB_00719 0.33 -0.4
736,815 - OHPLBJKB_00719 0.35 +0.4
736,826 + OHPLBJKB_00719 0.36 -0.4
736,826 + OHPLBJKB_00719 0.36 +0.4
736,826 + OHPLBJKB_00719 0.36 +0.6
736,827 - OHPLBJKB_00719 0.36 -0.7
736,888 + OHPLBJKB_00719 0.42 -2.4
736,894 + OHPLBJKB_00719 0.42 -0.2
736,895 - OHPLBJKB_00719 0.43 -0.7
736,942 + OHPLBJKB_00719 0.47 +0.6
736,942 + OHPLBJKB_00719 0.47 -0.2
736,943 - OHPLBJKB_00719 0.47 -0.4
736,967 + OHPLBJKB_00719 0.49 -0.8
736,975 + OHPLBJKB_00719 0.50 -1.7
736,975 + OHPLBJKB_00719 0.50 +0.5
736,976 - OHPLBJKB_00719 0.50 +0.8
736,976 - OHPLBJKB_00719 0.50 -0.0
737,050 + OHPLBJKB_00719 0.57 -1.1
737,050 + OHPLBJKB_00719 0.57 -0.4
737,051 - OHPLBJKB_00719 0.57 -1.0
737,051 - OHPLBJKB_00719 0.57 -0.0
737,051 - OHPLBJKB_00719 0.57 -0.7
737,114 + OHPLBJKB_00719 0.63 +0.9
737,114 + OHPLBJKB_00719 0.63 +0.5
737,130 + OHPLBJKB_00719 0.65 -0.4
737,130 + OHPLBJKB_00719 0.65 -0.3
737,130 + OHPLBJKB_00719 0.65 -0.0
737,131 - OHPLBJKB_00719 0.65 -0.2
737,131 - OHPLBJKB_00719 0.65 +1.7
737,131 - OHPLBJKB_00719 0.65 -0.2
737,131 - OHPLBJKB_00719 0.65 -1.1
737,328 + OHPLBJKB_00719 0.83 -0.5

Or see this region's nucleotide sequence