Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00691

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00690 and OHPLBJKB_00691 are separated by 136 nucleotidesOHPLBJKB_00691 and OHPLBJKB_00692 are separated by 39 nucleotidesOHPLBJKB_00692 and OHPLBJKB_00693 are separated by 139 nucleotides OHPLBJKB_00690: OHPLBJKB_00690 - Alcohol dehydrogenase YqhD, at 709,552 to 710,715 _00690 OHPLBJKB_00691: OHPLBJKB_00691 - HTH-type transcriptional activator RhaS, at 710,852 to 711,808 _00691 OHPLBJKB_00692: OHPLBJKB_00692 - Inner membrane protein YghB, at 711,848 to 712,507 _00692 OHPLBJKB_00693: OHPLBJKB_00693 - Cystathionine beta-lyase MetC, at 712,647 to 713,834 _00693 Position (kb) 710 711 712Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 709.914 kb on + strand, within OHPLBJKB_00690at 709.915 kb on - strand, within OHPLBJKB_00690at 710.003 kb on + strand, within OHPLBJKB_00690at 710.003 kb on + strand, within OHPLBJKB_00690at 710.104 kb on - strand, within OHPLBJKB_00690at 710.104 kb on - strand, within OHPLBJKB_00690at 710.108 kb on + strand, within OHPLBJKB_00690at 710.108 kb on + strand, within OHPLBJKB_00690at 710.108 kb on + strand, within OHPLBJKB_00690at 710.109 kb on - strand, within OHPLBJKB_00690at 710.109 kb on - strand, within OHPLBJKB_00690at 710.109 kb on - strand, within OHPLBJKB_00690at 710.109 kb on - strand, within OHPLBJKB_00690at 710.109 kb on - strand, within OHPLBJKB_00690at 710.125 kb on + strand, within OHPLBJKB_00690at 710.126 kb on - strand, within OHPLBJKB_00690at 710.126 kb on - strand, within OHPLBJKB_00690at 710.126 kb on - strand, within OHPLBJKB_00690at 710.174 kb on + strand, within OHPLBJKB_00690at 710.174 kb on + strand, within OHPLBJKB_00690at 710.175 kb on - strand, within OHPLBJKB_00690at 710.175 kb on - strand, within OHPLBJKB_00690at 710.175 kb on - strand, within OHPLBJKB_00690at 710.175 kb on - strand, within OHPLBJKB_00690at 710.178 kb on + strand, within OHPLBJKB_00690at 710.178 kb on + strand, within OHPLBJKB_00690at 710.179 kb on - strand, within OHPLBJKB_00690at 710.179 kb on - strand, within OHPLBJKB_00690at 710.179 kb on - strand, within OHPLBJKB_00690at 710.180 kb on + strand, within OHPLBJKB_00690at 710.254 kb on - strand, within OHPLBJKB_00690at 710.392 kb on - strand, within OHPLBJKB_00690at 710.392 kb on - strand, within OHPLBJKB_00690at 710.505 kb on - strand, within OHPLBJKB_00690at 710.524 kb on - strand, within OHPLBJKB_00690at 710.610 kb on - strandat 710.610 kb on - strandat 710.620 kb on + strandat 710.716 kb on + strandat 710.716 kb on + strandat 710.717 kb on - strandat 710.717 kb on - strandat 710.717 kb on - strandat 710.717 kb on - strandat 710.741 kb on - strandat 710.830 kb on - strandat 711.047 kb on + strand, within OHPLBJKB_00691at 711.048 kb on - strand, within OHPLBJKB_00691at 711.048 kb on - strand, within OHPLBJKB_00691at 711.063 kb on + strand, within OHPLBJKB_00691at 711.063 kb on + strand, within OHPLBJKB_00691at 711.063 kb on + strand, within OHPLBJKB_00691at 711.064 kb on - strand, within OHPLBJKB_00691at 711.083 kb on - strand, within OHPLBJKB_00691at 711.094 kb on + strand, within OHPLBJKB_00691at 711.095 kb on - strand, within OHPLBJKB_00691at 711.095 kb on - strand, within OHPLBJKB_00691at 711.173 kb on + strand, within OHPLBJKB_00691at 711.173 kb on + strand, within OHPLBJKB_00691at 711.174 kb on - strand, within OHPLBJKB_00691at 711.220 kb on + strand, within OHPLBJKB_00691at 711.231 kb on + strand, within OHPLBJKB_00691at 711.231 kb on + strand, within OHPLBJKB_00691at 711.413 kb on + strand, within OHPLBJKB_00691at 711.414 kb on - strand, within OHPLBJKB_00691at 711.416 kb on + strand, within OHPLBJKB_00691at 711.416 kb on + strand, within OHPLBJKB_00691at 711.416 kb on + strand, within OHPLBJKB_00691at 711.416 kb on + strand, within OHPLBJKB_00691at 711.416 kb on + strand, within OHPLBJKB_00691at 711.416 kb on + strand, within OHPLBJKB_00691at 711.417 kb on - strand, within OHPLBJKB_00691at 711.417 kb on - strand, within OHPLBJKB_00691at 711.514 kb on + strand, within OHPLBJKB_00691at 711.514 kb on + strand, within OHPLBJKB_00691at 711.515 kb on - strand, within OHPLBJKB_00691at 711.518 kb on + strand, within OHPLBJKB_00691at 711.518 kb on + strand, within OHPLBJKB_00691at 711.519 kb on - strand, within OHPLBJKB_00691at 711.519 kb on - strand, within OHPLBJKB_00691at 711.570 kb on + strand, within OHPLBJKB_00691at 711.571 kb on - strand, within OHPLBJKB_00691at 711.586 kb on + strand, within OHPLBJKB_00691at 711.587 kb on - strand, within OHPLBJKB_00691at 711.587 kb on - strand, within OHPLBJKB_00691at 711.592 kb on + strand, within OHPLBJKB_00691at 711.592 kb on + strand, within OHPLBJKB_00691at 711.592 kb on + strand, within OHPLBJKB_00691at 711.592 kb on + strand, within OHPLBJKB_00691at 711.593 kb on - strand, within OHPLBJKB_00691at 711.593 kb on - strand, within OHPLBJKB_00691at 711.593 kb on - strand, within OHPLBJKB_00691at 711.624 kb on - strand, within OHPLBJKB_00691at 711.636 kb on - strand, within OHPLBJKB_00691at 711.636 kb on - strand, within OHPLBJKB_00691at 711.646 kb on + strand, within OHPLBJKB_00691at 711.750 kb on - strandat 711.750 kb on - strandat 711.750 kb on - strandat 711.750 kb on - strandat 711.806 kb on + strandat 711.806 kb on + strandat 711.806 kb on + strandat 711.811 kb on - strandat 711.811 kb on - strandat 711.979 kb on + strand, within OHPLBJKB_00692at 711.979 kb on + strand, within OHPLBJKB_00692at 711.979 kb on + strand, within OHPLBJKB_00692at 711.979 kb on + strand, within OHPLBJKB_00692at 711.980 kb on - strand, within OHPLBJKB_00692at 711.983 kb on + strand, within OHPLBJKB_00692at 711.983 kb on + strand, within OHPLBJKB_00692at 711.983 kb on + strand, within OHPLBJKB_00692at 711.983 kb on + strand, within OHPLBJKB_00692at 711.983 kb on + strand, within OHPLBJKB_00692at 711.983 kb on + strand, within OHPLBJKB_00692at 711.984 kb on - strand, within OHPLBJKB_00692at 711.984 kb on - strand, within OHPLBJKB_00692at 711.984 kb on - strand, within OHPLBJKB_00692at 711.984 kb on - strand, within OHPLBJKB_00692at 711.984 kb on - strand, within OHPLBJKB_00692at 711.984 kb on - strand, within OHPLBJKB_00692at 711.984 kb on - strand, within OHPLBJKB_00692at 711.984 kb on - strand, within OHPLBJKB_00692at 711.990 kb on + strand, within OHPLBJKB_00692at 712.179 kb on + strand, within OHPLBJKB_00692at 712.179 kb on + strand, within OHPLBJKB_00692at 712.183 kb on + strand, within OHPLBJKB_00692at 712.183 kb on + strand, within OHPLBJKB_00692at 712.184 kb on - strand, within OHPLBJKB_00692at 712.184 kb on - strand, within OHPLBJKB_00692at 712.246 kb on + strand, within OHPLBJKB_00692at 712.246 kb on + strand, within OHPLBJKB_00692at 712.247 kb on - strand, within OHPLBJKB_00692at 712.248 kb on + strand, within OHPLBJKB_00692at 712.248 kb on + strand, within OHPLBJKB_00692at 712.248 kb on + strand, within OHPLBJKB_00692at 712.248 kb on + strand, within OHPLBJKB_00692at 712.248 kb on + strand, within OHPLBJKB_00692at 712.249 kb on - strand, within OHPLBJKB_00692at 712.249 kb on - strand, within OHPLBJKB_00692at 712.253 kb on + strand, within OHPLBJKB_00692at 712.254 kb on - strand, within OHPLBJKB_00692at 712.344 kb on - strand, within OHPLBJKB_00692at 712.423 kb on - strand, within OHPLBJKB_00692at 712.423 kb on - strand, within OHPLBJKB_00692at 712.423 kb on - strand, within OHPLBJKB_00692at 712.423 kb on - strand, within OHPLBJKB_00692at 712.438 kb on + strand, within OHPLBJKB_00692at 712.438 kb on + strand, within OHPLBJKB_00692at 712.439 kb on - strand, within OHPLBJKB_00692at 712.489 kb on + strandat 712.490 kb on - strandat 712.540 kb on - strandat 712.552 kb on + strandat 712.553 kb on - strandat 712.553 kb on - strandat 712.553 kb on - strandat 712.598 kb on - strandat 712.613 kb on + strandat 712.613 kb on + strandat 712.613 kb on + strandat 712.614 kb on - strandat 712.648 kb on + strandat 712.649 kb on - strandat 712.650 kb on + strandat 712.712 kb on + strandat 712.772 kb on + strand, within OHPLBJKB_00693

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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709,914 + OHPLBJKB_00690 0.31 +0.6
709,915 - OHPLBJKB_00690 0.31 +0.7
710,003 + OHPLBJKB_00690 0.39 +0.1
710,003 + OHPLBJKB_00690 0.39 -0.2
710,104 - OHPLBJKB_00690 0.47 +0.6
710,104 - OHPLBJKB_00690 0.47 +0.6
710,108 + OHPLBJKB_00690 0.48 +0.4
710,108 + OHPLBJKB_00690 0.48 -0.4
710,108 + OHPLBJKB_00690 0.48 +0.8
710,109 - OHPLBJKB_00690 0.48 -0.2
710,109 - OHPLBJKB_00690 0.48 +1.0
710,109 - OHPLBJKB_00690 0.48 -0.4
710,109 - OHPLBJKB_00690 0.48 -1.5
710,109 - OHPLBJKB_00690 0.48 -0.1
710,125 + OHPLBJKB_00690 0.49 +0.6
710,126 - OHPLBJKB_00690 0.49 -1.1
710,126 - OHPLBJKB_00690 0.49 -1.1
710,126 - OHPLBJKB_00690 0.49 +0.6
710,174 + OHPLBJKB_00690 0.53 -0.6
710,174 + OHPLBJKB_00690 0.53 -0.2
710,175 - OHPLBJKB_00690 0.54 +0.2
710,175 - OHPLBJKB_00690 0.54 -0.6
710,175 - OHPLBJKB_00690 0.54 -3.0
710,175 - OHPLBJKB_00690 0.54 -0.4
710,178 + OHPLBJKB_00690 0.54 -0.4
710,178 + OHPLBJKB_00690 0.54 -0.1
710,179 - OHPLBJKB_00690 0.54 +0.3
710,179 - OHPLBJKB_00690 0.54 +0.2
710,179 - OHPLBJKB_00690 0.54 +0.7
710,180 + OHPLBJKB_00690 0.54 -0.7
710,254 - OHPLBJKB_00690 0.60 +0.7
710,392 - OHPLBJKB_00690 0.72 +0.4
710,392 - OHPLBJKB_00690 0.72 +0.4
710,505 - OHPLBJKB_00690 0.82 -1.0
710,524 - OHPLBJKB_00690 0.84 -0.4
710,610 - -0.7
710,610 - +0.9
710,620 + -1.1
710,716 + +0.3
710,716 + -0.4
710,717 - -0.7
710,717 - -1.4
710,717 - -0.0
710,717 - +0.1
710,741 - -0.9
710,830 - -0.9
711,047 + OHPLBJKB_00691 0.20 -1.3
711,048 - OHPLBJKB_00691 0.20 -0.9
711,048 - OHPLBJKB_00691 0.20 -0.7
711,063 + OHPLBJKB_00691 0.22 -0.4
711,063 + OHPLBJKB_00691 0.22 +0.6
711,063 + OHPLBJKB_00691 0.22 -0.2
711,064 - OHPLBJKB_00691 0.22 -0.7
711,083 - OHPLBJKB_00691 0.24 -1.6
711,094 + OHPLBJKB_00691 0.25 +1.1
711,095 - OHPLBJKB_00691 0.25 -0.5
711,095 - OHPLBJKB_00691 0.25 +1.0
711,173 + OHPLBJKB_00691 0.34 +1.1
711,173 + OHPLBJKB_00691 0.34 +0.6
711,174 - OHPLBJKB_00691 0.34 +0.4
711,220 + OHPLBJKB_00691 0.38 -1.1
711,231 + OHPLBJKB_00691 0.40 -0.8
711,231 + OHPLBJKB_00691 0.40 -0.1
711,413 + OHPLBJKB_00691 0.59 -0.2
711,414 - OHPLBJKB_00691 0.59 -0.9
711,416 + OHPLBJKB_00691 0.59 -0.1
711,416 + OHPLBJKB_00691 0.59 -0.8
711,416 + OHPLBJKB_00691 0.59 +0.1
711,416 + OHPLBJKB_00691 0.59 +0.1
711,416 + OHPLBJKB_00691 0.59 -0.1
711,416 + OHPLBJKB_00691 0.59 -1.4
711,417 - OHPLBJKB_00691 0.59 +0.3
711,417 - OHPLBJKB_00691 0.59 +0.7
711,514 + OHPLBJKB_00691 0.69 -2.0
711,514 + OHPLBJKB_00691 0.69 -2.2
711,515 - OHPLBJKB_00691 0.69 -0.7
711,518 + OHPLBJKB_00691 0.70 +0.9
711,518 + OHPLBJKB_00691 0.70 +0.4
711,519 - OHPLBJKB_00691 0.70 -0.7
711,519 - OHPLBJKB_00691 0.70 +0.7
711,570 + OHPLBJKB_00691 0.75 -0.4
711,571 - OHPLBJKB_00691 0.75 -0.9
711,586 + OHPLBJKB_00691 0.77 -0.7
711,587 - OHPLBJKB_00691 0.77 -0.7
711,587 - OHPLBJKB_00691 0.77 -1.3
711,592 + OHPLBJKB_00691 0.77 +2.0
711,592 + OHPLBJKB_00691 0.77 -0.1
711,592 + OHPLBJKB_00691 0.77 -0.4
711,592 + OHPLBJKB_00691 0.77 -0.7
711,593 - OHPLBJKB_00691 0.77 +0.7
711,593 - OHPLBJKB_00691 0.77 +0.1
711,593 - OHPLBJKB_00691 0.77 +0.8
711,624 - OHPLBJKB_00691 0.81 -0.1
711,636 - OHPLBJKB_00691 0.82 +0.3
711,636 - OHPLBJKB_00691 0.82 -0.7
711,646 + OHPLBJKB_00691 0.83 -0.2
711,750 - +0.4
711,750 - -0.7
711,750 - -0.4
711,750 - -1.2
711,806 + +0.8
711,806 + +0.8
711,806 + -0.5
711,811 - -0.3
711,811 - +1.0
711,979 + OHPLBJKB_00692 0.20 +0.1
711,979 + OHPLBJKB_00692 0.20 +0.4
711,979 + OHPLBJKB_00692 0.20 +0.3
711,979 + OHPLBJKB_00692 0.20 -0.2
711,980 - OHPLBJKB_00692 0.20 +1.4
711,983 + OHPLBJKB_00692 0.20 +0.2
711,983 + OHPLBJKB_00692 0.20 +0.7
711,983 + OHPLBJKB_00692 0.20 -0.5
711,983 + OHPLBJKB_00692 0.20 -0.0
711,983 + OHPLBJKB_00692 0.20 +0.3
711,983 + OHPLBJKB_00692 0.20 +0.1
711,984 - OHPLBJKB_00692 0.21 +2.1
711,984 - OHPLBJKB_00692 0.21 +0.9
711,984 - OHPLBJKB_00692 0.21 +1.3
711,984 - OHPLBJKB_00692 0.21 +1.1
711,984 - OHPLBJKB_00692 0.21 +0.5
711,984 - OHPLBJKB_00692 0.21 +1.3
711,984 - OHPLBJKB_00692 0.21 -1.2
711,984 - OHPLBJKB_00692 0.21 +0.2
711,990 + OHPLBJKB_00692 0.22 +0.7
712,179 + OHPLBJKB_00692 0.50 -1.5
712,179 + OHPLBJKB_00692 0.50 -0.5
712,183 + OHPLBJKB_00692 0.51 +0.4
712,183 + OHPLBJKB_00692 0.51 -2.4
712,184 - OHPLBJKB_00692 0.51 -0.7
712,184 - OHPLBJKB_00692 0.51 -1.3
712,246 + OHPLBJKB_00692 0.60 +1.1
712,246 + OHPLBJKB_00692 0.60 -1.0
712,247 - OHPLBJKB_00692 0.60 -1.3
712,248 + OHPLBJKB_00692 0.61 -0.9
712,248 + OHPLBJKB_00692 0.61 -0.4
712,248 + OHPLBJKB_00692 0.61 -0.2
712,248 + OHPLBJKB_00692 0.61 -0.4
712,248 + OHPLBJKB_00692 0.61 +0.2
712,249 - OHPLBJKB_00692 0.61 +0.0
712,249 - OHPLBJKB_00692 0.61 +0.0
712,253 + OHPLBJKB_00692 0.61 -0.4
712,254 - OHPLBJKB_00692 0.62 +0.1
712,344 - OHPLBJKB_00692 0.75 -0.5
712,423 - OHPLBJKB_00692 0.87 +0.1
712,423 - OHPLBJKB_00692 0.87 -0.3
712,423 - OHPLBJKB_00692 0.87 -0.7
712,423 - OHPLBJKB_00692 0.87 -0.6
712,438 + OHPLBJKB_00692 0.89 +0.3
712,438 + OHPLBJKB_00692 0.89 +0.1
712,439 - OHPLBJKB_00692 0.90 -0.3
712,489 + +0.5
712,490 - +0.1
712,540 - -0.9
712,552 + +0.3
712,553 - +0.1
712,553 - -0.3
712,553 - -0.9
712,598 - -0.5
712,613 + -0.1
712,613 + -0.6
712,613 + +0.4
712,614 - +0.3
712,648 + -0.7
712,649 - +0.6
712,650 + +0.5
712,712 + -1.3
712,772 + OHPLBJKB_00693 0.11 +0.2

Or see this region's nucleotide sequence