Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00539

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00538 and OHPLBJKB_00539 are separated by 153 nucleotidesOHPLBJKB_00539 and OHPLBJKB_00540 are separated by 117 nucleotides OHPLBJKB_00538: OHPLBJKB_00538 - ATP-dependent RNA helicase DeaD, at 552,115 to 554,004 _00538 OHPLBJKB_00539: OHPLBJKB_00539 - Tryptophan-specific transport protein, at 554,158 to 555,402 _00539 OHPLBJKB_00540: OHPLBJKB_00540 - hypothetical protein, at 555,520 to 556,527 _00540 Position (kb) 554 555 556Strain fitness (log2 ratio) -2 -1 0 1 2at 553.200 kb on + strand, within OHPLBJKB_00538at 553.203 kb on + strand, within OHPLBJKB_00538at 553.226 kb on + strand, within OHPLBJKB_00538at 553.422 kb on + strand, within OHPLBJKB_00538at 553.422 kb on + strand, within OHPLBJKB_00538at 553.422 kb on + strand, within OHPLBJKB_00538at 553.422 kb on + strand, within OHPLBJKB_00538at 553.423 kb on - strand, within OHPLBJKB_00538at 553.423 kb on - strand, within OHPLBJKB_00538at 553.569 kb on + strand, within OHPLBJKB_00538at 553.579 kb on + strand, within OHPLBJKB_00538at 553.623 kb on + strand, within OHPLBJKB_00538at 553.624 kb on - strand, within OHPLBJKB_00538at 553.674 kb on + strand, within OHPLBJKB_00538at 553.722 kb on + strand, within OHPLBJKB_00538at 553.749 kb on + strand, within OHPLBJKB_00538at 553.875 kb on + strandat 554.042 kb on + strandat 554.043 kb on - strandat 554.043 kb on - strandat 554.043 kb on - strandat 554.043 kb on - strandat 554.044 kb on + strandat 554.044 kb on + strandat 554.044 kb on + strandat 554.045 kb on - strandat 554.045 kb on - strandat 554.045 kb on - strandat 554.045 kb on - strandat 554.116 kb on + strandat 554.116 kb on + strandat 554.124 kb on + strandat 554.168 kb on + strandat 554.320 kb on - strand, within OHPLBJKB_00539at 554.455 kb on + strand, within OHPLBJKB_00539at 554.455 kb on + strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.473 kb on + strand, within OHPLBJKB_00539at 554.473 kb on + strand, within OHPLBJKB_00539at 554.473 kb on + strand, within OHPLBJKB_00539at 554.473 kb on + strand, within OHPLBJKB_00539at 554.474 kb on - strand, within OHPLBJKB_00539at 554.474 kb on - strand, within OHPLBJKB_00539at 554.475 kb on + strand, within OHPLBJKB_00539at 554.476 kb on - strand, within OHPLBJKB_00539at 554.476 kb on - strand, within OHPLBJKB_00539at 554.593 kb on - strand, within OHPLBJKB_00539at 554.593 kb on - strand, within OHPLBJKB_00539at 554.595 kb on + strand, within OHPLBJKB_00539at 554.595 kb on + strand, within OHPLBJKB_00539at 554.596 kb on - strand, within OHPLBJKB_00539at 554.725 kb on + strand, within OHPLBJKB_00539at 554.726 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.875 kb on + strand, within OHPLBJKB_00539at 554.877 kb on + strand, within OHPLBJKB_00539at 554.877 kb on + strand, within OHPLBJKB_00539at 554.975 kb on + strand, within OHPLBJKB_00539at 554.976 kb on - strand, within OHPLBJKB_00539at 554.976 kb on - strand, within OHPLBJKB_00539at 555.194 kb on - strand, within OHPLBJKB_00539at 555.206 kb on - strand, within OHPLBJKB_00539at 555.270 kb on + strand, within OHPLBJKB_00539at 555.322 kb on - strandat 555.363 kb on + strandat 555.379 kb on - strandat 555.394 kb on + strandat 555.460 kb on + strandat 555.461 kb on - strandat 555.469 kb on + strandat 555.469 kb on + strandat 555.470 kb on - strandat 555.685 kb on - strand, within OHPLBJKB_00540at 555.685 kb on - strand, within OHPLBJKB_00540at 555.685 kb on - strand, within OHPLBJKB_00540at 555.708 kb on - strand, within OHPLBJKB_00540at 555.849 kb on + strand, within OHPLBJKB_00540at 555.852 kb on + strand, within OHPLBJKB_00540at 555.853 kb on - strand, within OHPLBJKB_00540at 555.872 kb on + strand, within OHPLBJKB_00540at 555.940 kb on - strand, within OHPLBJKB_00540at 556.004 kb on + strand, within OHPLBJKB_00540at 556.129 kb on - strand, within OHPLBJKB_00540at 556.146 kb on + strand, within OHPLBJKB_00540at 556.146 kb on + strand, within OHPLBJKB_00540at 556.147 kb on - strand, within OHPLBJKB_00540at 556.147 kb on - strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.231 kb on - strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.234 kb on - strand, within OHPLBJKB_00540at 556.234 kb on - strand, within OHPLBJKB_00540at 556.275 kb on + strand, within OHPLBJKB_00540at 556.317 kb on + strand, within OHPLBJKB_00540at 556.339 kb on + strand, within OHPLBJKB_00540at 556.340 kb on - strand, within OHPLBJKB_00540at 556.340 kb on - strand, within OHPLBJKB_00540at 556.374 kb on + strand, within OHPLBJKB_00540at 556.374 kb on + strand, within OHPLBJKB_00540at 556.375 kb on - strand, within OHPLBJKB_00540at 556.375 kb on - strand, within OHPLBJKB_00540at 556.397 kb on + strand, within OHPLBJKB_00540

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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553,200 + OHPLBJKB_00538 0.57 -1.5
553,203 + OHPLBJKB_00538 0.58 +2.2
553,226 + OHPLBJKB_00538 0.59 +1.2
553,422 + OHPLBJKB_00538 0.69 -1.3
553,422 + OHPLBJKB_00538 0.69 -0.4
553,422 + OHPLBJKB_00538 0.69 -1.3
553,422 + OHPLBJKB_00538 0.69 -0.6
553,423 - OHPLBJKB_00538 0.69 -1.3
553,423 - OHPLBJKB_00538 0.69 -0.1
553,569 + OHPLBJKB_00538 0.77 -1.1
553,579 + OHPLBJKB_00538 0.77 -0.3
553,623 + OHPLBJKB_00538 0.80 -0.4
553,624 - OHPLBJKB_00538 0.80 +0.2
553,674 + OHPLBJKB_00538 0.82 +0.3
553,722 + OHPLBJKB_00538 0.85 -1.0
553,749 + OHPLBJKB_00538 0.86 -1.3
553,875 + +0.0
554,042 + +2.0
554,043 - +0.4
554,043 - +0.4
554,043 - -0.7
554,043 - -0.1
554,044 + -0.7
554,044 + -0.1
554,044 + -0.4
554,045 - +0.8
554,045 - +0.6
554,045 - -0.0
554,045 - +0.2
554,116 + +0.9
554,116 + -1.0
554,124 + -0.1
554,168 + +0.4
554,320 - OHPLBJKB_00539 0.13 -0.4
554,455 + OHPLBJKB_00539 0.24 -0.3
554,455 + OHPLBJKB_00539 0.24 -0.6
554,456 - OHPLBJKB_00539 0.24 +0.0
554,456 - OHPLBJKB_00539 0.24 -0.4
554,456 - OHPLBJKB_00539 0.24 -0.9
554,456 - OHPLBJKB_00539 0.24 +0.6
554,456 - OHPLBJKB_00539 0.24 +0.5
554,456 - OHPLBJKB_00539 0.24 -1.5
554,456 - OHPLBJKB_00539 0.24 +0.5
554,456 - OHPLBJKB_00539 0.24 +1.3
554,456 - OHPLBJKB_00539 0.24 -1.3
554,467 + OHPLBJKB_00539 0.25 -0.1
554,467 + OHPLBJKB_00539 0.25 +0.7
554,467 + OHPLBJKB_00539 0.25 -1.3
554,467 + OHPLBJKB_00539 0.25 +0.4
554,467 + OHPLBJKB_00539 0.25 +1.0
554,467 + OHPLBJKB_00539 0.25 +0.7
554,467 + OHPLBJKB_00539 0.25 +0.9
554,467 + OHPLBJKB_00539 0.25 +0.1
554,468 - OHPLBJKB_00539 0.25 +0.3
554,468 - OHPLBJKB_00539 0.25 -0.3
554,468 - OHPLBJKB_00539 0.25 -0.0
554,468 - OHPLBJKB_00539 0.25 +1.4
554,468 - OHPLBJKB_00539 0.25 +0.6
554,468 - OHPLBJKB_00539 0.25 -0.8
554,468 - OHPLBJKB_00539 0.25 -0.2
554,473 + OHPLBJKB_00539 0.25 +0.5
554,473 + OHPLBJKB_00539 0.25 -0.4
554,473 + OHPLBJKB_00539 0.25 +0.1
554,473 + OHPLBJKB_00539 0.25 +0.1
554,474 - OHPLBJKB_00539 0.25 -0.7
554,474 - OHPLBJKB_00539 0.25 +1.0
554,475 + OHPLBJKB_00539 0.25 -0.8
554,476 - OHPLBJKB_00539 0.26 -0.0
554,476 - OHPLBJKB_00539 0.26 +1.3
554,593 - OHPLBJKB_00539 0.35 -0.4
554,593 - OHPLBJKB_00539 0.35 +0.8
554,595 + OHPLBJKB_00539 0.35 +0.2
554,595 + OHPLBJKB_00539 0.35 -0.0
554,596 - OHPLBJKB_00539 0.35 -0.3
554,725 + OHPLBJKB_00539 0.46 -0.1
554,726 - OHPLBJKB_00539 0.46 -1.5
554,807 - OHPLBJKB_00539 0.52 -0.1
554,807 - OHPLBJKB_00539 0.52 -1.2
554,807 - OHPLBJKB_00539 0.52 +0.1
554,807 - OHPLBJKB_00539 0.52 +0.4
554,875 + OHPLBJKB_00539 0.58 +0.6
554,877 + OHPLBJKB_00539 0.58 -2.3
554,877 + OHPLBJKB_00539 0.58 -0.2
554,975 + OHPLBJKB_00539 0.66 +0.9
554,976 - OHPLBJKB_00539 0.66 -0.8
554,976 - OHPLBJKB_00539 0.66 +1.0
555,194 - OHPLBJKB_00539 0.83 -0.8
555,206 - OHPLBJKB_00539 0.84 -0.1
555,270 + OHPLBJKB_00539 0.89 -0.1
555,322 - -0.6
555,363 + +0.4
555,379 - +0.6
555,394 + -0.1
555,460 + +0.2
555,461 - +0.6
555,469 + -0.5
555,469 + +2.2
555,470 - -0.3
555,685 - OHPLBJKB_00540 0.16 -0.2
555,685 - OHPLBJKB_00540 0.16 -0.7
555,685 - OHPLBJKB_00540 0.16 -1.1
555,708 - OHPLBJKB_00540 0.19 -0.6
555,849 + OHPLBJKB_00540 0.33 +0.2
555,852 + OHPLBJKB_00540 0.33 -0.2
555,853 - OHPLBJKB_00540 0.33 -1.5
555,872 + OHPLBJKB_00540 0.35 -0.8
555,940 - OHPLBJKB_00540 0.42 -0.3
556,004 + OHPLBJKB_00540 0.48 -0.8
556,129 - OHPLBJKB_00540 0.60 -0.1
556,146 + OHPLBJKB_00540 0.62 -0.2
556,146 + OHPLBJKB_00540 0.62 +0.5
556,147 - OHPLBJKB_00540 0.62 -0.8
556,147 - OHPLBJKB_00540 0.62 +0.1
556,230 + OHPLBJKB_00540 0.70 -0.7
556,230 + OHPLBJKB_00540 0.70 -2.3
556,230 + OHPLBJKB_00540 0.70 +0.4
556,230 + OHPLBJKB_00540 0.70 -0.1
556,230 + OHPLBJKB_00540 0.70 -0.4
556,231 - OHPLBJKB_00540 0.71 -2.1
556,233 + OHPLBJKB_00540 0.71 +0.4
556,233 + OHPLBJKB_00540 0.71 +0.8
556,233 + OHPLBJKB_00540 0.71 -0.9
556,233 + OHPLBJKB_00540 0.71 -0.4
556,233 + OHPLBJKB_00540 0.71 -1.2
556,234 - OHPLBJKB_00540 0.71 -0.9
556,234 - OHPLBJKB_00540 0.71 -1.7
556,275 + OHPLBJKB_00540 0.75 -0.6
556,317 + OHPLBJKB_00540 0.79 +0.6
556,339 + OHPLBJKB_00540 0.81 -0.9
556,340 - OHPLBJKB_00540 0.81 -0.3
556,340 - OHPLBJKB_00540 0.81 -1.3
556,374 + OHPLBJKB_00540 0.85 -2.0
556,374 + OHPLBJKB_00540 0.85 +0.2
556,375 - OHPLBJKB_00540 0.85 +0.7
556,375 - OHPLBJKB_00540 0.85 -1.7
556,397 + OHPLBJKB_00540 0.87 +0.9

Or see this region's nucleotide sequence