Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00487

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00485 and OHPLBJKB_00486 are separated by 16 nucleotidesOHPLBJKB_00486 and OHPLBJKB_00487 are separated by 183 nucleotidesOHPLBJKB_00487 and OHPLBJKB_00488 are separated by 12 nucleotides OHPLBJKB_00485: OHPLBJKB_00485 - hypothetical protein, at 498,373 to 498,678 _00485 OHPLBJKB_00486: OHPLBJKB_00486 - Putative nuclease YhcG, at 498,695 to 499,174 _00486 OHPLBJKB_00487: OHPLBJKB_00487 - Glutamate synthase [NADPH] small chain, at 499,358 to 500,776 _00487 OHPLBJKB_00488: OHPLBJKB_00488 - Glutamate synthase [NADPH] large chain, at 500,789 to 505,342 _00488 Position (kb) 499 500 501Strain fitness (log2 ratio) -2 -1 0 1 2at 498.394 kb on + strandat 498.395 kb on - strandat 498.411 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.416 kb on + strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.417 kb on - strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.418 kb on + strand, within OHPLBJKB_00485at 498.419 kb on - strand, within OHPLBJKB_00485at 498.419 kb on - strand, within OHPLBJKB_00485at 498.419 kb on - strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.420 kb on + strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.421 kb on - strand, within OHPLBJKB_00485at 498.456 kb on + strand, within OHPLBJKB_00485at 498.457 kb on - strand, within OHPLBJKB_00485at 498.457 kb on - strand, within OHPLBJKB_00485at 498.459 kb on + strand, within OHPLBJKB_00485at 498.459 kb on + strand, within OHPLBJKB_00485at 498.459 kb on + strand, within OHPLBJKB_00485at 498.460 kb on - strand, within OHPLBJKB_00485at 498.468 kb on + strand, within OHPLBJKB_00485at 498.468 kb on + strand, within OHPLBJKB_00485at 498.469 kb on - strand, within OHPLBJKB_00485at 498.469 kb on - strand, within OHPLBJKB_00485at 498.469 kb on - strand, within OHPLBJKB_00485at 498.469 kb on - strand, within OHPLBJKB_00485at 498.474 kb on + strand, within OHPLBJKB_00485at 498.474 kb on + strand, within OHPLBJKB_00485at 498.541 kb on + strand, within OHPLBJKB_00485at 498.541 kb on + strand, within OHPLBJKB_00485at 498.558 kb on + strand, within OHPLBJKB_00485at 498.558 kb on + strand, within OHPLBJKB_00485at 498.559 kb on - strand, within OHPLBJKB_00485at 498.563 kb on - strand, within OHPLBJKB_00485at 498.646 kb on - strand, within OHPLBJKB_00485at 498.672 kb on - strandat 498.672 kb on - strandat 498.672 kb on - strandat 498.709 kb on - strandat 498.709 kb on - strandat 498.710 kb on + strandat 498.710 kb on + strandat 498.941 kb on - strand, within OHPLBJKB_00486at 498.941 kb on - strand, within OHPLBJKB_00486at 498.941 kb on - strand, within OHPLBJKB_00486at 498.941 kb on - strand, within OHPLBJKB_00486at 498.942 kb on + strand, within OHPLBJKB_00486at 498.942 kb on + strand, within OHPLBJKB_00486at 498.942 kb on + strand, within OHPLBJKB_00486at 498.943 kb on - strand, within OHPLBJKB_00486at 498.948 kb on - strand, within OHPLBJKB_00486at 498.953 kb on + strand, within OHPLBJKB_00486at 498.954 kb on - strand, within OHPLBJKB_00486at 498.954 kb on - strand, within OHPLBJKB_00486at 498.954 kb on - strand, within OHPLBJKB_00486at 498.978 kb on - strand, within OHPLBJKB_00486at 498.978 kb on - strand, within OHPLBJKB_00486at 499.051 kb on - strand, within OHPLBJKB_00486at 499.051 kb on - strand, within OHPLBJKB_00486at 499.051 kb on - strand, within OHPLBJKB_00486at 499.079 kb on - strand, within OHPLBJKB_00486at 499.083 kb on - strand, within OHPLBJKB_00486at 499.117 kb on + strand, within OHPLBJKB_00486at 499.117 kb on + strand, within OHPLBJKB_00486at 499.117 kb on + strand, within OHPLBJKB_00486at 499.118 kb on - strand, within OHPLBJKB_00486at 499.118 kb on - strand, within OHPLBJKB_00486at 499.120 kb on + strand, within OHPLBJKB_00486at 499.187 kb on + strandat 499.187 kb on + strandat 499.187 kb on + strandat 499.187 kb on + strandat 499.188 kb on - strandat 499.188 kb on - strandat 499.189 kb on + strandat 499.190 kb on - strandat 499.222 kb on - strandat 499.259 kb on - strandat 499.261 kb on + strandat 499.261 kb on + strandat 499.262 kb on - strandat 499.378 kb on + strandat 499.378 kb on + strandat 499.397 kb on - strandat 499.612 kb on + strand, within OHPLBJKB_00487at 499.612 kb on + strand, within OHPLBJKB_00487at 499.612 kb on + strand, within OHPLBJKB_00487at 499.613 kb on - strand, within OHPLBJKB_00487at 499.613 kb on - strand, within OHPLBJKB_00487at 499.682 kb on + strand, within OHPLBJKB_00487at 499.682 kb on + strand, within OHPLBJKB_00487at 499.683 kb on - strand, within OHPLBJKB_00487at 499.691 kb on + strand, within OHPLBJKB_00487at 499.757 kb on + strand, within OHPLBJKB_00487at 499.758 kb on - strand, within OHPLBJKB_00487at 499.825 kb on - strand, within OHPLBJKB_00487at 499.835 kb on - strand, within OHPLBJKB_00487at 499.864 kb on + strand, within OHPLBJKB_00487at 499.865 kb on - strand, within OHPLBJKB_00487at 499.865 kb on - strand, within OHPLBJKB_00487at 499.865 kb on - strand, within OHPLBJKB_00487at 500.004 kb on + strand, within OHPLBJKB_00487at 500.004 kb on + strand, within OHPLBJKB_00487at 500.005 kb on - strand, within OHPLBJKB_00487at 500.052 kb on + strand, within OHPLBJKB_00487at 500.052 kb on + strand, within OHPLBJKB_00487at 500.267 kb on + strand, within OHPLBJKB_00487at 500.401 kb on + strand, within OHPLBJKB_00487at 500.402 kb on - strand, within OHPLBJKB_00487at 500.403 kb on + strand, within OHPLBJKB_00487at 500.403 kb on + strand, within OHPLBJKB_00487at 500.403 kb on + strand, within OHPLBJKB_00487at 500.403 kb on + strand, within OHPLBJKB_00487at 500.404 kb on - strand, within OHPLBJKB_00487at 500.404 kb on - strand, within OHPLBJKB_00487at 500.586 kb on + strand, within OHPLBJKB_00487at 500.586 kb on + strand, within OHPLBJKB_00487at 500.586 kb on + strand, within OHPLBJKB_00487at 500.587 kb on - strand, within OHPLBJKB_00487at 500.587 kb on - strand, within OHPLBJKB_00487at 500.587 kb on - strand, within OHPLBJKB_00487at 500.587 kb on - strand, within OHPLBJKB_00487at 500.784 kb on - strandat 500.849 kb on + strandat 500.849 kb on + strandat 500.850 kb on - strandat 500.850 kb on - strandat 500.850 kb on - strandat 500.938 kb on + strandat 500.960 kb on - strandat 500.960 kb on - strandat 500.960 kb on - strandat 501.005 kb on + strandat 501.006 kb on - strandat 501.067 kb on - strandat 501.067 kb on - strandat 501.067 kb on - strandat 501.142 kb on + strandat 501.142 kb on + strandat 501.142 kb on + strandat 501.142 kb on + strandat 501.142 kb on + strandat 501.142 kb on + strandat 501.142 kb on + strandat 501.143 kb on - strandat 501.143 kb on - strandat 501.143 kb on - strandat 501.143 kb on - strandat 501.143 kb on - strandat 501.144 kb on + strandat 501.144 kb on + strandat 501.145 kb on - strandat 501.145 kb on - strandat 501.173 kb on + strandat 501.174 kb on - strandat 501.174 kb on - strandat 501.174 kb on - strandat 501.174 kb on - strandat 501.174 kb on - strandat 501.174 kb on - strandat 501.184 kb on + strandat 501.196 kb on + strandat 501.234 kb on + strandat 501.234 kb on + strandat 501.235 kb on - strandat 501.361 kb on - strand, within OHPLBJKB_00488at 501.361 kb on - strand, within OHPLBJKB_00488at 501.361 kb on - strand, within OHPLBJKB_00488at 501.361 kb on - strand, within OHPLBJKB_00488at 501.384 kb on + strand, within OHPLBJKB_00488at 501.385 kb on - strand, within OHPLBJKB_00488at 501.385 kb on - strand, within OHPLBJKB_00488at 501.445 kb on - strand, within OHPLBJKB_00488at 501.498 kb on + strand, within OHPLBJKB_00488at 501.498 kb on + strand, within OHPLBJKB_00488at 501.498 kb on + strand, within OHPLBJKB_00488at 501.499 kb on - strand, within OHPLBJKB_00488at 501.499 kb on - strand, within OHPLBJKB_00488at 501.499 kb on - strand, within OHPLBJKB_00488at 501.651 kb on + strand, within OHPLBJKB_00488at 501.652 kb on - strand, within OHPLBJKB_00488at 501.662 kb on - strand, within OHPLBJKB_00488

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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498,394 + -1.1
498,395 - +0.5
498,411 + OHPLBJKB_00485 0.12 -0.8
498,416 + OHPLBJKB_00485 0.14 +1.6
498,416 + OHPLBJKB_00485 0.14 +0.0
498,416 + OHPLBJKB_00485 0.14 +1.0
498,416 + OHPLBJKB_00485 0.14 +0.3
498,416 + OHPLBJKB_00485 0.14 -0.8
498,416 + OHPLBJKB_00485 0.14 -0.6
498,416 + OHPLBJKB_00485 0.14 +0.8
498,416 + OHPLBJKB_00485 0.14 -0.8
498,416 + OHPLBJKB_00485 0.14 -0.2
498,416 + OHPLBJKB_00485 0.14 -1.0
498,416 + OHPLBJKB_00485 0.14 -0.4
498,417 - OHPLBJKB_00485 0.14 -0.7
498,417 - OHPLBJKB_00485 0.14 +0.1
498,417 - OHPLBJKB_00485 0.14 -0.6
498,417 - OHPLBJKB_00485 0.14 -0.6
498,417 - OHPLBJKB_00485 0.14 +0.0
498,417 - OHPLBJKB_00485 0.14 -0.6
498,417 - OHPLBJKB_00485 0.14 -0.7
498,417 - OHPLBJKB_00485 0.14 +1.2
498,418 + OHPLBJKB_00485 0.15 -0.8
498,418 + OHPLBJKB_00485 0.15 -0.6
498,418 + OHPLBJKB_00485 0.15 -1.6
498,418 + OHPLBJKB_00485 0.15 -0.1
498,418 + OHPLBJKB_00485 0.15 -1.4
498,419 - OHPLBJKB_00485 0.15 -1.0
498,419 - OHPLBJKB_00485 0.15 -0.6
498,419 - OHPLBJKB_00485 0.15 -0.4
498,420 + OHPLBJKB_00485 0.15 -0.2
498,420 + OHPLBJKB_00485 0.15 -0.6
498,420 + OHPLBJKB_00485 0.15 +1.3
498,420 + OHPLBJKB_00485 0.15 +0.7
498,420 + OHPLBJKB_00485 0.15 -0.1
498,420 + OHPLBJKB_00485 0.15 +0.6
498,421 - OHPLBJKB_00485 0.16 -0.5
498,421 - OHPLBJKB_00485 0.16 -0.2
498,421 - OHPLBJKB_00485 0.16 +0.4
498,421 - OHPLBJKB_00485 0.16 +0.6
498,421 - OHPLBJKB_00485 0.16 -0.4
498,421 - OHPLBJKB_00485 0.16 +0.9
498,421 - OHPLBJKB_00485 0.16 -0.2
498,421 - OHPLBJKB_00485 0.16 +0.7
498,421 - OHPLBJKB_00485 0.16 -1.0
498,456 + OHPLBJKB_00485 0.27 -0.3
498,457 - OHPLBJKB_00485 0.27 +0.5
498,457 - OHPLBJKB_00485 0.27 +0.1
498,459 + OHPLBJKB_00485 0.28 +0.3
498,459 + OHPLBJKB_00485 0.28 -0.7
498,459 + OHPLBJKB_00485 0.28 +1.1
498,460 - OHPLBJKB_00485 0.28 -0.4
498,468 + OHPLBJKB_00485 0.31 -1.0
498,468 + OHPLBJKB_00485 0.31 +0.3
498,469 - OHPLBJKB_00485 0.31 -0.4
498,469 - OHPLBJKB_00485 0.31 -1.9
498,469 - OHPLBJKB_00485 0.31 +2.0
498,469 - OHPLBJKB_00485 0.31 -0.6
498,474 + OHPLBJKB_00485 0.33 -0.6
498,474 + OHPLBJKB_00485 0.33 -1.1
498,541 + OHPLBJKB_00485 0.55 +1.0
498,541 + OHPLBJKB_00485 0.55 -0.9
498,558 + OHPLBJKB_00485 0.60 -0.4
498,558 + OHPLBJKB_00485 0.60 -0.6
498,559 - OHPLBJKB_00485 0.61 -0.0
498,563 - OHPLBJKB_00485 0.62 -0.3
498,646 - OHPLBJKB_00485 0.89 +0.3
498,672 - +0.1
498,672 - -0.2
498,672 - +0.5
498,709 - +1.0
498,709 - -0.2
498,710 + -0.4
498,710 + -1.2
498,941 - OHPLBJKB_00486 0.51 +1.7
498,941 - OHPLBJKB_00486 0.51 -0.7
498,941 - OHPLBJKB_00486 0.51 -0.2
498,941 - OHPLBJKB_00486 0.51 -0.3
498,942 + OHPLBJKB_00486 0.51 -0.5
498,942 + OHPLBJKB_00486 0.51 +0.6
498,942 + OHPLBJKB_00486 0.51 -0.6
498,943 - OHPLBJKB_00486 0.52 -0.6
498,948 - OHPLBJKB_00486 0.53 +0.3
498,953 + OHPLBJKB_00486 0.54 -0.6
498,954 - OHPLBJKB_00486 0.54 +1.8
498,954 - OHPLBJKB_00486 0.54 +0.4
498,954 - OHPLBJKB_00486 0.54 +0.2
498,978 - OHPLBJKB_00486 0.59 -0.4
498,978 - OHPLBJKB_00486 0.59 -0.2
499,051 - OHPLBJKB_00486 0.74 -0.9
499,051 - OHPLBJKB_00486 0.74 -1.1
499,051 - OHPLBJKB_00486 0.74 -0.2
499,079 - OHPLBJKB_00486 0.80 -1.2
499,083 - OHPLBJKB_00486 0.81 +0.0
499,117 + OHPLBJKB_00486 0.88 +0.5
499,117 + OHPLBJKB_00486 0.88 -0.5
499,117 + OHPLBJKB_00486 0.88 +0.4
499,118 - OHPLBJKB_00486 0.88 -0.7
499,118 - OHPLBJKB_00486 0.88 +0.4
499,120 + OHPLBJKB_00486 0.89 +0.3
499,187 + +1.0
499,187 + -0.2
499,187 + -0.2
499,187 + +0.9
499,188 - -2.3
499,188 - +0.3
499,189 + +0.5
499,190 - -0.4
499,222 - -0.5
499,259 - -2.1
499,261 + +0.0
499,261 + +0.0
499,262 - -0.2
499,378 + +1.0
499,378 + -0.3
499,397 - -0.7
499,612 + OHPLBJKB_00487 0.18 -0.0
499,612 + OHPLBJKB_00487 0.18 +0.1
499,612 + OHPLBJKB_00487 0.18 -1.2
499,613 - OHPLBJKB_00487 0.18 +0.5
499,613 - OHPLBJKB_00487 0.18 -0.1
499,682 + OHPLBJKB_00487 0.23 +0.6
499,682 + OHPLBJKB_00487 0.23 +0.4
499,683 - OHPLBJKB_00487 0.23 -0.5
499,691 + OHPLBJKB_00487 0.23 -1.3
499,757 + OHPLBJKB_00487 0.28 -0.8
499,758 - OHPLBJKB_00487 0.28 -0.7
499,825 - OHPLBJKB_00487 0.33 -1.7
499,835 - OHPLBJKB_00487 0.34 +0.3
499,864 + OHPLBJKB_00487 0.36 +0.3
499,865 - OHPLBJKB_00487 0.36 -0.2
499,865 - OHPLBJKB_00487 0.36 -0.6
499,865 - OHPLBJKB_00487 0.36 -0.3
500,004 + OHPLBJKB_00487 0.46 -0.7
500,004 + OHPLBJKB_00487 0.46 -1.6
500,005 - OHPLBJKB_00487 0.46 -1.4
500,052 + OHPLBJKB_00487 0.49 +1.5
500,052 + OHPLBJKB_00487 0.49 -0.6
500,267 + OHPLBJKB_00487 0.64 -1.5
500,401 + OHPLBJKB_00487 0.74 -0.2
500,402 - OHPLBJKB_00487 0.74 -1.5
500,403 + OHPLBJKB_00487 0.74 -0.9
500,403 + OHPLBJKB_00487 0.74 -0.7
500,403 + OHPLBJKB_00487 0.74 -0.6
500,403 + OHPLBJKB_00487 0.74 -0.1
500,404 - OHPLBJKB_00487 0.74 +0.8
500,404 - OHPLBJKB_00487 0.74 -0.7
500,586 + OHPLBJKB_00487 0.87 +1.0
500,586 + OHPLBJKB_00487 0.87 +0.9
500,586 + OHPLBJKB_00487 0.87 -0.3
500,587 - OHPLBJKB_00487 0.87 +0.2
500,587 - OHPLBJKB_00487 0.87 -0.4
500,587 - OHPLBJKB_00487 0.87 -0.0
500,587 - OHPLBJKB_00487 0.87 -0.4
500,784 - -0.1
500,849 + +0.0
500,849 + -0.3
500,850 - +0.9
500,850 - -0.8
500,850 - +0.1
500,938 + +1.2
500,960 - -2.4
500,960 - +0.4
500,960 - +1.2
501,005 + -1.3
501,006 - +0.1
501,067 - -0.8
501,067 - -1.4
501,067 - -0.5
501,142 + -1.2
501,142 + -1.3
501,142 + -1.2
501,142 + +0.6
501,142 + +1.0
501,142 + -0.0
501,142 + -1.1
501,143 - +0.5
501,143 - +0.0
501,143 - +0.3
501,143 - -0.8
501,143 - +0.6
501,144 + -0.1
501,144 + -0.6
501,145 - -1.8
501,145 - -0.1
501,173 + +1.3
501,174 - +0.7
501,174 - -0.2
501,174 - -1.0
501,174 - -1.6
501,174 - +1.6
501,174 - +0.1
501,184 + -0.6
501,196 + -0.2
501,234 + +0.2
501,234 + +0.3
501,235 - -1.0
501,361 - OHPLBJKB_00488 0.13 +1.2
501,361 - OHPLBJKB_00488 0.13 +1.2
501,361 - OHPLBJKB_00488 0.13 -0.6
501,361 - OHPLBJKB_00488 0.13 -1.0
501,384 + OHPLBJKB_00488 0.13 +0.9
501,385 - OHPLBJKB_00488 0.13 +0.1
501,385 - OHPLBJKB_00488 0.13 +0.0
501,445 - OHPLBJKB_00488 0.14 -0.7
501,498 + OHPLBJKB_00488 0.16 -0.5
501,498 + OHPLBJKB_00488 0.16 -0.7
501,498 + OHPLBJKB_00488 0.16 +0.5
501,499 - OHPLBJKB_00488 0.16 -1.3
501,499 - OHPLBJKB_00488 0.16 +0.6
501,499 - OHPLBJKB_00488 0.16 -0.0
501,651 + OHPLBJKB_00488 0.19 -0.3
501,652 - OHPLBJKB_00488 0.19 -0.8
501,662 - OHPLBJKB_00488 0.19 +0.2

Or see this region's nucleotide sequence