Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00425

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00424 and OHPLBJKB_00425 are separated by 476 nucleotidesOHPLBJKB_00425 and OHPLBJKB_00426 are separated by 69 nucleotidesOHPLBJKB_00426 and OHPLBJKB_00427 are separated by 42 nucleotidesOHPLBJKB_00427 and OHPLBJKB_00428 are separated by 176 nucleotides OHPLBJKB_00424: OHPLBJKB_00424 - Protein YrdA, at 436,768 to 437,322 _00424 OHPLBJKB_00425: OHPLBJKB_00425 - 16S ribosomal RNA, at 437,799 to 439,336 _00425 OHPLBJKB_00426: OHPLBJKB_00426 - tRNA-Ile, at 439,406 to 439,482 _00426 OHPLBJKB_00427: OHPLBJKB_00427 - tRNA-Ala, at 439,525 to 439,600 _00427 OHPLBJKB_00428: OHPLBJKB_00428 - 23S ribosomal RNA, at 439,777 to 442,677 _00428 Position (kb) 437 438 439 440Strain fitness (log2 ratio) -2 -1 0 1 2at 436.820 kb on + strandat 436.824 kb on + strand, within OHPLBJKB_00424at 436.824 kb on + strand, within OHPLBJKB_00424at 436.825 kb on - strand, within OHPLBJKB_00424at 436.836 kb on - strand, within OHPLBJKB_00424at 436.836 kb on - strand, within OHPLBJKB_00424at 436.864 kb on + strand, within OHPLBJKB_00424at 436.898 kb on + strand, within OHPLBJKB_00424at 436.904 kb on + strand, within OHPLBJKB_00424at 436.924 kb on - strand, within OHPLBJKB_00424at 436.969 kb on + strand, within OHPLBJKB_00424at 436.969 kb on + strand, within OHPLBJKB_00424at 436.969 kb on + strand, within OHPLBJKB_00424at 436.969 kb on + strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.973 kb on - strand, within OHPLBJKB_00424at 436.973 kb on - strand, within OHPLBJKB_00424at 436.973 kb on - strand, within OHPLBJKB_00424at 436.988 kb on - strand, within OHPLBJKB_00424at 437.113 kb on - strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.131 kb on - strand, within OHPLBJKB_00424at 437.131 kb on - strand, within OHPLBJKB_00424at 437.168 kb on - strand, within OHPLBJKB_00424at 437.168 kb on - strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.322 kb on + strandat 437.322 kb on + strandat 437.322 kb on + strandat 437.322 kb on + strandat 437.322 kb on + strandat 437.322 kb on + strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.326 kb on + strandat 437.327 kb on - strandat 437.327 kb on - strandat 437.346 kb on + strandat 437.346 kb on + strandat 437.347 kb on - strandat 437.349 kb on + strandat 437.368 kb on - strandat 437.389 kb on + strandat 437.389 kb on + strandat 437.390 kb on - strandat 437.497 kb on + strandat 437.498 kb on - strandat 437.499 kb on + strandat 437.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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436,820 + -0.5
436,824 + OHPLBJKB_00424 0.10 -0.8
436,824 + OHPLBJKB_00424 0.10 +0.8
436,825 - OHPLBJKB_00424 0.10 +0.0
436,836 - OHPLBJKB_00424 0.12 -0.6
436,836 - OHPLBJKB_00424 0.12 -0.3
436,864 + OHPLBJKB_00424 0.17 -0.8
436,898 + OHPLBJKB_00424 0.23 -0.3
436,904 + OHPLBJKB_00424 0.25 +1.3
436,924 - OHPLBJKB_00424 0.28 -1.1
436,969 + OHPLBJKB_00424 0.36 -0.6
436,969 + OHPLBJKB_00424 0.36 -0.3
436,969 + OHPLBJKB_00424 0.36 +0.5
436,969 + OHPLBJKB_00424 0.36 -0.1
436,970 - OHPLBJKB_00424 0.36 -0.8
436,970 - OHPLBJKB_00424 0.36 -1.3
436,970 - OHPLBJKB_00424 0.36 +0.3
436,970 - OHPLBJKB_00424 0.36 +0.1
436,970 - OHPLBJKB_00424 0.36 -0.3
436,970 - OHPLBJKB_00424 0.36 -0.0
436,970 - OHPLBJKB_00424 0.36 -0.3
436,973 - OHPLBJKB_00424 0.37 -1.1
436,973 - OHPLBJKB_00424 0.37 -0.2
436,973 - OHPLBJKB_00424 0.37 -1.6
436,988 - OHPLBJKB_00424 0.40 +0.1
437,113 - OHPLBJKB_00424 0.62 -0.9
437,130 + OHPLBJKB_00424 0.65 +0.8
437,130 + OHPLBJKB_00424 0.65 -0.9
437,130 + OHPLBJKB_00424 0.65 -0.7
437,130 + OHPLBJKB_00424 0.65 +2.2
437,130 + OHPLBJKB_00424 0.65 +2.0
437,130 + OHPLBJKB_00424 0.65 -0.1
437,131 - OHPLBJKB_00424 0.65 -0.1
437,131 - OHPLBJKB_00424 0.65 +0.2
437,168 - OHPLBJKB_00424 0.72 -1.8
437,168 - OHPLBJKB_00424 0.72 +0.2
437,171 + OHPLBJKB_00424 0.73 -0.6
437,171 + OHPLBJKB_00424 0.73 -0.8
437,171 + OHPLBJKB_00424 0.73 +0.9
437,171 + OHPLBJKB_00424 0.73 -0.2
437,171 + OHPLBJKB_00424 0.73 -0.8
437,171 + OHPLBJKB_00424 0.73 -1.3
437,171 + OHPLBJKB_00424 0.73 +0.2
437,171 + OHPLBJKB_00424 0.73 -0.0
437,171 + OHPLBJKB_00424 0.73 +0.4
437,171 + OHPLBJKB_00424 0.73 +0.4
437,171 + OHPLBJKB_00424 0.73 -0.1
437,172 - OHPLBJKB_00424 0.73 +0.5
437,172 - OHPLBJKB_00424 0.73 -0.8
437,172 - OHPLBJKB_00424 0.73 -2.2
437,172 - OHPLBJKB_00424 0.73 +0.4
437,172 - OHPLBJKB_00424 0.73 -2.2
437,172 - OHPLBJKB_00424 0.73 +0.4
437,172 - OHPLBJKB_00424 0.73 +0.7
437,172 - OHPLBJKB_00424 0.73 -0.2
437,172 - OHPLBJKB_00424 0.73 +0.7
437,172 - OHPLBJKB_00424 0.73 +0.1
437,176 + OHPLBJKB_00424 0.74 -0.6
437,176 + OHPLBJKB_00424 0.74 -0.1
437,176 + OHPLBJKB_00424 0.74 -1.2
437,176 + OHPLBJKB_00424 0.74 +0.4
437,176 + OHPLBJKB_00424 0.74 -0.8
437,176 + OHPLBJKB_00424 0.74 +0.7
437,176 + OHPLBJKB_00424 0.74 -0.6
437,176 + OHPLBJKB_00424 0.74 -1.1
437,177 - OHPLBJKB_00424 0.74 +0.0
437,177 - OHPLBJKB_00424 0.74 +0.1
437,177 - OHPLBJKB_00424 0.74 -0.9
437,177 - OHPLBJKB_00424 0.74 -1.8
437,177 - OHPLBJKB_00424 0.74 -1.3
437,177 - OHPLBJKB_00424 0.74 +0.2
437,322 + +0.6
437,322 + -0.3
437,322 + +0.2
437,322 + -0.9
437,322 + +0.2
437,322 + -1.0
437,323 - +0.5
437,323 - +0.7
437,323 - -0.1
437,323 - -0.2
437,323 - -0.1
437,323 - -1.0
437,323 - -1.1
437,323 - -0.6
437,323 - +0.5
437,323 - +0.3
437,323 - +0.2
437,323 - -0.2
437,326 + -1.6
437,327 - +0.2
437,327 - -1.1
437,346 + -0.9
437,346 + -0.8
437,347 - +0.0
437,349 + -1.1
437,368 - -0.4
437,389 + +0.3
437,389 + +1.0
437,390 - -1.1
437,497 + -0.5
437,498 - +0.5
437,499 + -0.8
437,606 + -0.0

Or see this region's nucleotide sequence