Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00379

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00378 and OHPLBJKB_00379 overlap by 17 nucleotidesOHPLBJKB_00379 and OHPLBJKB_00380 are separated by 179 nucleotides OHPLBJKB_00378: OHPLBJKB_00378 - Putative type II secretion system protein D, at 408,229 to 410,181 _00378 OHPLBJKB_00379: OHPLBJKB_00379 - Putative type II secretion system protein C, at 410,165 to 410,980 _00379 OHPLBJKB_00380: OHPLBJKB_00380 - Putative general secretion pathway protein A, at 411,160 to 412,629 _00380 Position (kb) 410 411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 409.171 kb on + strand, within OHPLBJKB_00378at 409.224 kb on + strand, within OHPLBJKB_00378at 409.224 kb on + strand, within OHPLBJKB_00378at 409.225 kb on - strand, within OHPLBJKB_00378at 409.225 kb on - strand, within OHPLBJKB_00378at 409.358 kb on + strand, within OHPLBJKB_00378at 409.359 kb on - strand, within OHPLBJKB_00378at 409.367 kb on + strand, within OHPLBJKB_00378at 409.368 kb on - strand, within OHPLBJKB_00378at 409.370 kb on + strand, within OHPLBJKB_00378at 409.371 kb on - strand, within OHPLBJKB_00378at 409.421 kb on - strand, within OHPLBJKB_00378at 409.464 kb on + strand, within OHPLBJKB_00378at 409.465 kb on - strand, within OHPLBJKB_00378at 409.465 kb on - strand, within OHPLBJKB_00378at 409.527 kb on + strand, within OHPLBJKB_00378at 409.528 kb on - strand, within OHPLBJKB_00378at 409.547 kb on - strand, within OHPLBJKB_00378at 409.640 kb on - strand, within OHPLBJKB_00378at 409.656 kb on + strand, within OHPLBJKB_00378at 409.656 kb on + strand, within OHPLBJKB_00378at 409.659 kb on + strand, within OHPLBJKB_00378at 409.686 kb on + strand, within OHPLBJKB_00378at 409.687 kb on - strand, within OHPLBJKB_00378at 409.706 kb on + strand, within OHPLBJKB_00378at 409.706 kb on + strand, within OHPLBJKB_00378at 409.707 kb on - strand, within OHPLBJKB_00378at 409.707 kb on - strand, within OHPLBJKB_00378at 409.819 kb on + strand, within OHPLBJKB_00378at 409.819 kb on + strand, within OHPLBJKB_00378at 409.820 kb on - strand, within OHPLBJKB_00378at 409.820 kb on - strand, within OHPLBJKB_00378at 409.820 kb on - strand, within OHPLBJKB_00378at 409.864 kb on + strand, within OHPLBJKB_00378at 409.865 kb on - strand, within OHPLBJKB_00378at 409.869 kb on + strand, within OHPLBJKB_00378at 409.869 kb on + strand, within OHPLBJKB_00378at 409.869 kb on + strand, within OHPLBJKB_00378at 409.870 kb on - strand, within OHPLBJKB_00378at 409.920 kb on - strand, within OHPLBJKB_00378at 409.926 kb on - strand, within OHPLBJKB_00378at 409.926 kb on - strand, within OHPLBJKB_00378at 409.938 kb on + strand, within OHPLBJKB_00378at 409.938 kb on + strand, within OHPLBJKB_00378at 409.938 kb on + strand, within OHPLBJKB_00378at 409.939 kb on - strand, within OHPLBJKB_00378at 409.939 kb on - strand, within OHPLBJKB_00378at 409.939 kb on - strand, within OHPLBJKB_00378at 409.939 kb on - strand, within OHPLBJKB_00378at 409.943 kb on - strand, within OHPLBJKB_00378at 409.956 kb on - strand, within OHPLBJKB_00378at 409.956 kb on - strand, within OHPLBJKB_00378at 409.956 kb on - strand, within OHPLBJKB_00378at 409.956 kb on - strand, within OHPLBJKB_00378at 409.956 kb on - strand, within OHPLBJKB_00378at 409.971 kb on + strand, within OHPLBJKB_00378at 409.978 kb on - strand, within OHPLBJKB_00378at 409.978 kb on - strand, within OHPLBJKB_00378at 409.978 kb on - strand, within OHPLBJKB_00378at 409.978 kb on - strand, within OHPLBJKB_00378at 409.978 kb on - strand, within OHPLBJKB_00378at 409.978 kb on - strand, within OHPLBJKB_00378at 409.984 kb on - strand, within OHPLBJKB_00378at 409.984 kb on - strand, within OHPLBJKB_00378at 409.984 kb on - strand, within OHPLBJKB_00378at 410.054 kb on - strandat 410.166 kb on + strandat 410.203 kb on + strandat 410.204 kb on - strandat 410.204 kb on - strandat 410.226 kb on - strandat 410.257 kb on + strand, within OHPLBJKB_00379at 410.280 kb on - strand, within OHPLBJKB_00379at 410.291 kb on + strand, within OHPLBJKB_00379at 410.350 kb on + strand, within OHPLBJKB_00379at 410.363 kb on + strand, within OHPLBJKB_00379at 410.364 kb on - strand, within OHPLBJKB_00379at 410.364 kb on - strand, within OHPLBJKB_00379at 410.364 kb on - strand, within OHPLBJKB_00379at 410.395 kb on + strand, within OHPLBJKB_00379at 410.419 kb on - strand, within OHPLBJKB_00379at 410.420 kb on + strand, within OHPLBJKB_00379at 410.420 kb on + strand, within OHPLBJKB_00379at 410.438 kb on + strand, within OHPLBJKB_00379at 410.439 kb on - strand, within OHPLBJKB_00379at 410.439 kb on - strand, within OHPLBJKB_00379at 410.439 kb on - strand, within OHPLBJKB_00379at 410.452 kb on + strand, within OHPLBJKB_00379at 410.455 kb on + strand, within OHPLBJKB_00379at 410.455 kb on + strand, within OHPLBJKB_00379at 410.457 kb on + strand, within OHPLBJKB_00379at 410.457 kb on + strand, within OHPLBJKB_00379at 410.458 kb on - strand, within OHPLBJKB_00379at 410.653 kb on + strand, within OHPLBJKB_00379at 410.658 kb on - strand, within OHPLBJKB_00379at 410.690 kb on + strand, within OHPLBJKB_00379at 410.691 kb on - strand, within OHPLBJKB_00379at 410.691 kb on - strand, within OHPLBJKB_00379at 410.710 kb on + strand, within OHPLBJKB_00379at 410.710 kb on + strand, within OHPLBJKB_00379at 410.719 kb on + strand, within OHPLBJKB_00379at 410.719 kb on + strand, within OHPLBJKB_00379at 410.719 kb on + strand, within OHPLBJKB_00379at 410.719 kb on + strand, within OHPLBJKB_00379at 410.719 kb on + strand, within OHPLBJKB_00379at 410.719 kb on + strand, within OHPLBJKB_00379at 410.720 kb on - strand, within OHPLBJKB_00379at 410.720 kb on - strand, within OHPLBJKB_00379at 410.760 kb on - strand, within OHPLBJKB_00379at 410.855 kb on + strand, within OHPLBJKB_00379at 410.855 kb on + strand, within OHPLBJKB_00379at 410.855 kb on + strand, within OHPLBJKB_00379at 410.857 kb on + strand, within OHPLBJKB_00379at 410.857 kb on + strand, within OHPLBJKB_00379at 410.857 kb on + strand, within OHPLBJKB_00379at 410.858 kb on - strand, within OHPLBJKB_00379at 410.969 kb on + strandat 410.970 kb on - strandat 410.970 kb on - strandat 411.088 kb on - strandat 411.092 kb on - strandat 411.111 kb on - strandat 411.111 kb on - strandat 411.115 kb on + strandat 411.160 kb on - strandat 411.221 kb on + strandat 411.221 kb on + strandat 411.222 kb on - strandat 411.226 kb on + strandat 411.286 kb on - strandat 411.303 kb on + strandat 411.304 kb on - strandat 411.308 kb on + strand, within OHPLBJKB_00380at 411.309 kb on - strand, within OHPLBJKB_00380at 411.309 kb on - strand, within OHPLBJKB_00380at 411.422 kb on + strand, within OHPLBJKB_00380at 411.423 kb on - strand, within OHPLBJKB_00380at 411.462 kb on + strand, within OHPLBJKB_00380at 411.462 kb on + strand, within OHPLBJKB_00380at 411.462 kb on + strand, within OHPLBJKB_00380at 411.531 kb on + strand, within OHPLBJKB_00380at 411.673 kb on - strand, within OHPLBJKB_00380at 411.719 kb on + strand, within OHPLBJKB_00380at 411.725 kb on + strand, within OHPLBJKB_00380at 411.725 kb on + strand, within OHPLBJKB_00380at 411.726 kb on - strand, within OHPLBJKB_00380at 411.726 kb on - strand, within OHPLBJKB_00380at 411.728 kb on + strand, within OHPLBJKB_00380at 411.728 kb on + strand, within OHPLBJKB_00380at 411.728 kb on + strand, within OHPLBJKB_00380at 411.728 kb on + strand, within OHPLBJKB_00380at 411.729 kb on - strand, within OHPLBJKB_00380at 411.729 kb on - strand, within OHPLBJKB_00380at 411.729 kb on - strand, within OHPLBJKB_00380at 411.729 kb on - strand, within OHPLBJKB_00380at 411.780 kb on - strand, within OHPLBJKB_00380at 411.782 kb on + strand, within OHPLBJKB_00380at 411.836 kb on - strand, within OHPLBJKB_00380at 411.909 kb on + strand, within OHPLBJKB_00380at 411.909 kb on + strand, within OHPLBJKB_00380at 411.910 kb on - strand, within OHPLBJKB_00380at 411.910 kb on - strand, within OHPLBJKB_00380at 411.910 kb on - strand, within OHPLBJKB_00380at 411.910 kb on - strand, within OHPLBJKB_00380at 411.939 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.945 kb on + strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380at 411.946 kb on - strand, within OHPLBJKB_00380

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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409,171 + OHPLBJKB_00378 0.48 +1.0
409,224 + OHPLBJKB_00378 0.51 +0.2
409,224 + OHPLBJKB_00378 0.51 -0.2
409,225 - OHPLBJKB_00378 0.51 +0.5
409,225 - OHPLBJKB_00378 0.51 -0.2
409,358 + OHPLBJKB_00378 0.58 -0.4
409,359 - OHPLBJKB_00378 0.58 +1.5
409,367 + OHPLBJKB_00378 0.58 +0.4
409,368 - OHPLBJKB_00378 0.58 -0.8
409,370 + OHPLBJKB_00378 0.58 -0.8
409,371 - OHPLBJKB_00378 0.58 -0.4
409,421 - OHPLBJKB_00378 0.61 +0.4
409,464 + OHPLBJKB_00378 0.63 -0.0
409,465 - OHPLBJKB_00378 0.63 +0.2
409,465 - OHPLBJKB_00378 0.63 +0.2
409,527 + OHPLBJKB_00378 0.66 -0.6
409,528 - OHPLBJKB_00378 0.67 +0.2
409,547 - OHPLBJKB_00378 0.67 -1.8
409,640 - OHPLBJKB_00378 0.72 -0.5
409,656 + OHPLBJKB_00378 0.73 -1.0
409,656 + OHPLBJKB_00378 0.73 -1.8
409,659 + OHPLBJKB_00378 0.73 -0.2
409,686 + OHPLBJKB_00378 0.75 +0.8
409,687 - OHPLBJKB_00378 0.75 +0.4
409,706 + OHPLBJKB_00378 0.76 +0.2
409,706 + OHPLBJKB_00378 0.76 +0.2
409,707 - OHPLBJKB_00378 0.76 +0.9
409,707 - OHPLBJKB_00378 0.76 +0.2
409,819 + OHPLBJKB_00378 0.81 +0.1
409,819 + OHPLBJKB_00378 0.81 -0.8
409,820 - OHPLBJKB_00378 0.81 -0.0
409,820 - OHPLBJKB_00378 0.81 -1.2
409,820 - OHPLBJKB_00378 0.81 -0.3
409,864 + OHPLBJKB_00378 0.84 +0.5
409,865 - OHPLBJKB_00378 0.84 -0.5
409,869 + OHPLBJKB_00378 0.84 +0.6
409,869 + OHPLBJKB_00378 0.84 -0.7
409,869 + OHPLBJKB_00378 0.84 +0.3
409,870 - OHPLBJKB_00378 0.84 -1.5
409,920 - OHPLBJKB_00378 0.87 -0.2
409,926 - OHPLBJKB_00378 0.87 -0.4
409,926 - OHPLBJKB_00378 0.87 +0.7
409,938 + OHPLBJKB_00378 0.88 -0.2
409,938 + OHPLBJKB_00378 0.88 +0.4
409,938 + OHPLBJKB_00378 0.88 -0.8
409,939 - OHPLBJKB_00378 0.88 +0.6
409,939 - OHPLBJKB_00378 0.88 +0.7
409,939 - OHPLBJKB_00378 0.88 +0.2
409,939 - OHPLBJKB_00378 0.88 -0.0
409,943 - OHPLBJKB_00378 0.88 -1.8
409,956 - OHPLBJKB_00378 0.88 +1.2
409,956 - OHPLBJKB_00378 0.88 +0.5
409,956 - OHPLBJKB_00378 0.88 +1.1
409,956 - OHPLBJKB_00378 0.88 -1.0
409,956 - OHPLBJKB_00378 0.88 -1.9
409,971 + OHPLBJKB_00378 0.89 +2.2
409,978 - OHPLBJKB_00378 0.90 +1.0
409,978 - OHPLBJKB_00378 0.90 +0.0
409,978 - OHPLBJKB_00378 0.90 +2.0
409,978 - OHPLBJKB_00378 0.90 +1.2
409,978 - OHPLBJKB_00378 0.90 -0.1
409,978 - OHPLBJKB_00378 0.90 +0.1
409,984 - OHPLBJKB_00378 0.90 +0.1
409,984 - OHPLBJKB_00378 0.90 -0.0
409,984 - OHPLBJKB_00378 0.90 -1.6
410,054 - +0.1
410,166 + -0.5
410,203 + -1.7
410,204 - -1.2
410,204 - -1.6
410,226 - +0.2
410,257 + OHPLBJKB_00379 0.11 -0.6
410,280 - OHPLBJKB_00379 0.14 -0.3
410,291 + OHPLBJKB_00379 0.15 -0.0
410,350 + OHPLBJKB_00379 0.23 -0.6
410,363 + OHPLBJKB_00379 0.24 -1.1
410,364 - OHPLBJKB_00379 0.24 -1.3
410,364 - OHPLBJKB_00379 0.24 -0.7
410,364 - OHPLBJKB_00379 0.24 -1.7
410,395 + OHPLBJKB_00379 0.28 +0.2
410,419 - OHPLBJKB_00379 0.31 -1.8
410,420 + OHPLBJKB_00379 0.31 +2.0
410,420 + OHPLBJKB_00379 0.31 +1.8
410,438 + OHPLBJKB_00379 0.33 +1.0
410,439 - OHPLBJKB_00379 0.34 -0.6
410,439 - OHPLBJKB_00379 0.34 -1.5
410,439 - OHPLBJKB_00379 0.34 +0.0
410,452 + OHPLBJKB_00379 0.35 +1.0
410,455 + OHPLBJKB_00379 0.36 -0.9
410,455 + OHPLBJKB_00379 0.36 +0.6
410,457 + OHPLBJKB_00379 0.36 +1.7
410,457 + OHPLBJKB_00379 0.36 -0.9
410,458 - OHPLBJKB_00379 0.36 -1.7
410,653 + OHPLBJKB_00379 0.60 -0.3
410,658 - OHPLBJKB_00379 0.60 -0.9
410,690 + OHPLBJKB_00379 0.64 -1.1
410,691 - OHPLBJKB_00379 0.64 -0.1
410,691 - OHPLBJKB_00379 0.64 -0.8
410,710 + OHPLBJKB_00379 0.67 +0.0
410,710 + OHPLBJKB_00379 0.67 -0.3
410,719 + OHPLBJKB_00379 0.68 -0.1
410,719 + OHPLBJKB_00379 0.68 +0.5
410,719 + OHPLBJKB_00379 0.68 +0.5
410,719 + OHPLBJKB_00379 0.68 -0.2
410,719 + OHPLBJKB_00379 0.68 +0.2
410,719 + OHPLBJKB_00379 0.68 -0.1
410,720 - OHPLBJKB_00379 0.68 -0.8
410,720 - OHPLBJKB_00379 0.68 -0.7
410,760 - OHPLBJKB_00379 0.73 +0.8
410,855 + OHPLBJKB_00379 0.85 +0.7
410,855 + OHPLBJKB_00379 0.85 +0.2
410,855 + OHPLBJKB_00379 0.85 -1.8
410,857 + OHPLBJKB_00379 0.85 +1.2
410,857 + OHPLBJKB_00379 0.85 -0.2
410,857 + OHPLBJKB_00379 0.85 -0.6
410,858 - OHPLBJKB_00379 0.85 -1.4
410,969 + -0.3
410,970 - -2.8
410,970 - -1.9
411,088 - -0.8
411,092 - +0.1
411,111 - -0.3
411,111 - +0.7
411,115 + -0.2
411,160 - +1.0
411,221 + +0.4
411,221 + -1.4
411,222 - +0.5
411,226 + -1.3
411,286 - -0.2
411,303 + -1.3
411,304 - -0.8
411,308 + OHPLBJKB_00380 0.10 +0.4
411,309 - OHPLBJKB_00380 0.10 -1.7
411,309 - OHPLBJKB_00380 0.10 +0.3
411,422 + OHPLBJKB_00380 0.18 -0.6
411,423 - OHPLBJKB_00380 0.18 +1.2
411,462 + OHPLBJKB_00380 0.21 -0.6
411,462 + OHPLBJKB_00380 0.21 -0.2
411,462 + OHPLBJKB_00380 0.21 -0.6
411,531 + OHPLBJKB_00380 0.25 -1.6
411,673 - OHPLBJKB_00380 0.35 -0.6
411,719 + OHPLBJKB_00380 0.38 -0.6
411,725 + OHPLBJKB_00380 0.38 -1.2
411,725 + OHPLBJKB_00380 0.38 +0.1
411,726 - OHPLBJKB_00380 0.39 -0.6
411,726 - OHPLBJKB_00380 0.39 +0.3
411,728 + OHPLBJKB_00380 0.39 +0.2
411,728 + OHPLBJKB_00380 0.39 +0.8
411,728 + OHPLBJKB_00380 0.39 +0.1
411,728 + OHPLBJKB_00380 0.39 -0.4
411,729 - OHPLBJKB_00380 0.39 +0.4
411,729 - OHPLBJKB_00380 0.39 +1.9
411,729 - OHPLBJKB_00380 0.39 +2.0
411,729 - OHPLBJKB_00380 0.39 -0.5
411,780 - OHPLBJKB_00380 0.42 -0.5
411,782 + OHPLBJKB_00380 0.42 -0.3
411,836 - OHPLBJKB_00380 0.46 -1.3
411,909 + OHPLBJKB_00380 0.51 -0.8
411,909 + OHPLBJKB_00380 0.51 -0.7
411,910 - OHPLBJKB_00380 0.51 +0.2
411,910 - OHPLBJKB_00380 0.51 +1.2
411,910 - OHPLBJKB_00380 0.51 -1.3
411,910 - OHPLBJKB_00380 0.51 -0.5
411,939 + OHPLBJKB_00380 0.53 +0.7
411,945 + OHPLBJKB_00380 0.53 +0.1
411,945 + OHPLBJKB_00380 0.53 +0.6
411,945 + OHPLBJKB_00380 0.53 -0.0
411,945 + OHPLBJKB_00380 0.53 +0.8
411,945 + OHPLBJKB_00380 0.53 -0.3
411,945 + OHPLBJKB_00380 0.53 +1.2
411,946 - OHPLBJKB_00380 0.53 -1.0
411,946 - OHPLBJKB_00380 0.53 -0.5
411,946 - OHPLBJKB_00380 0.53 -0.1
411,946 - OHPLBJKB_00380 0.53 -1.5
411,946 - OHPLBJKB_00380 0.53 +0.7
411,946 - OHPLBJKB_00380 0.53 -0.2
411,946 - OHPLBJKB_00380 0.53 +0.7
411,946 - OHPLBJKB_00380 0.53 -0.4

Or see this region's nucleotide sequence