Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00238

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00235 and OHPLBJKB_00236 are separated by 140 nucleotidesOHPLBJKB_00236 and OHPLBJKB_00237 are separated by 2 nucleotidesOHPLBJKB_00237 and OHPLBJKB_00238 overlap by 11 nucleotidesOHPLBJKB_00238 and OHPLBJKB_00239 are separated by 149 nucleotides OHPLBJKB_00235: OHPLBJKB_00235 - hypothetical protein, at 258,254 to 258,880 _00235 OHPLBJKB_00236: OHPLBJKB_00236 - hypothetical protein, at 259,021 to 259,380 _00236 OHPLBJKB_00237: OHPLBJKB_00237 - hypothetical protein, at 259,383 to 259,652 _00237 OHPLBJKB_00238: OHPLBJKB_00238 - Ribosomal RNA small subunit methyltransferase D, at 259,642 to 260,238 _00238 OHPLBJKB_00239: OHPLBJKB_00239 - Signal recognition particle receptor FtsY, at 260,388 to 261,884 _00239 Position (kb) 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1at 258.723 kb on + strand, within OHPLBJKB_00235at 258.724 kb on - strand, within OHPLBJKB_00235at 258.724 kb on - strand, within OHPLBJKB_00235at 258.727 kb on + strand, within OHPLBJKB_00235at 258.727 kb on + strand, within OHPLBJKB_00235at 258.727 kb on + strand, within OHPLBJKB_00235at 258.727 kb on + strand, within OHPLBJKB_00235at 258.727 kb on + strand, within OHPLBJKB_00235at 258.790 kb on + strand, within OHPLBJKB_00235at 258.791 kb on - strand, within OHPLBJKB_00235at 258.822 kb on + strandat 258.839 kb on + strandat 258.884 kb on - strandat 258.884 kb on - strandat 258.973 kb on + strandat 258.973 kb on + strandat 258.974 kb on - strandat 258.986 kb on - strandat 258.986 kb on - strandat 258.991 kb on + strandat 259.050 kb on + strandat 259.116 kb on + strand, within OHPLBJKB_00236at 259.330 kb on - strand, within OHPLBJKB_00236at 259.340 kb on - strand, within OHPLBJKB_00236at 259.342 kb on - strand, within OHPLBJKB_00236at 259.378 kb on + strandat 259.378 kb on + strandat 259.378 kb on + strandat 259.378 kb on + strandat 259.378 kb on + strandat 259.378 kb on + strandat 259.379 kb on - strandat 259.379 kb on - strandat 259.517 kb on + strand, within OHPLBJKB_00237at 259.517 kb on + strand, within OHPLBJKB_00237at 259.517 kb on + strand, within OHPLBJKB_00237at 259.518 kb on - strand, within OHPLBJKB_00237at 259.518 kb on - strand, within OHPLBJKB_00237at 259.562 kb on + strand, within OHPLBJKB_00237at 259.562 kb on + strand, within OHPLBJKB_00237at 259.643 kb on + strandat 259.643 kb on + strandat 259.689 kb on - strandat 259.775 kb on + strand, within OHPLBJKB_00238at 259.775 kb on + strand, within OHPLBJKB_00238at 259.776 kb on - strand, within OHPLBJKB_00238at 259.823 kb on - strand, within OHPLBJKB_00238at 259.835 kb on - strand, within OHPLBJKB_00238at 259.870 kb on + strand, within OHPLBJKB_00238at 259.870 kb on + strand, within OHPLBJKB_00238at 259.870 kb on + strand, within OHPLBJKB_00238at 259.870 kb on + strand, within OHPLBJKB_00238at 259.870 kb on + strand, within OHPLBJKB_00238at 259.870 kb on + strand, within OHPLBJKB_00238at 259.871 kb on - strand, within OHPLBJKB_00238at 259.871 kb on - strand, within OHPLBJKB_00238at 259.871 kb on - strand, within OHPLBJKB_00238at 259.871 kb on - strand, within OHPLBJKB_00238at 259.871 kb on - strand, within OHPLBJKB_00238at 259.872 kb on + strand, within OHPLBJKB_00238at 259.872 kb on + strand, within OHPLBJKB_00238at 259.872 kb on + strand, within OHPLBJKB_00238at 259.873 kb on - strand, within OHPLBJKB_00238at 259.873 kb on - strand, within OHPLBJKB_00238at 259.873 kb on - strand, within OHPLBJKB_00238at 259.873 kb on - strand, within OHPLBJKB_00238at 259.873 kb on - strand, within OHPLBJKB_00238at 259.873 kb on - strand, within OHPLBJKB_00238at 259.873 kb on - strand, within OHPLBJKB_00238at 259.873 kb on - strand, within OHPLBJKB_00238at 259.875 kb on + strand, within OHPLBJKB_00238at 259.875 kb on + strand, within OHPLBJKB_00238at 259.875 kb on + strand, within OHPLBJKB_00238at 259.876 kb on - strand, within OHPLBJKB_00238at 259.876 kb on - strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.877 kb on + strand, within OHPLBJKB_00238at 259.878 kb on - strand, within OHPLBJKB_00238at 259.878 kb on - strand, within OHPLBJKB_00238at 259.878 kb on - strand, within OHPLBJKB_00238at 259.878 kb on - strand, within OHPLBJKB_00238at 259.878 kb on - strand, within OHPLBJKB_00238at 259.878 kb on - strand, within OHPLBJKB_00238at 259.925 kb on - strand, within OHPLBJKB_00238at 259.945 kb on + strand, within OHPLBJKB_00238at 259.946 kb on - strand, within OHPLBJKB_00238at 259.962 kb on + strand, within OHPLBJKB_00238at 259.963 kb on - strand, within OHPLBJKB_00238at 259.967 kb on - strand, within OHPLBJKB_00238at 259.967 kb on - strand, within OHPLBJKB_00238at 259.967 kb on - strand, within OHPLBJKB_00238at 260.019 kb on - strand, within OHPLBJKB_00238at 260.106 kb on + strand, within OHPLBJKB_00238at 260.106 kb on + strand, within OHPLBJKB_00238at 260.106 kb on + strand, within OHPLBJKB_00238at 260.107 kb on - strand, within OHPLBJKB_00238at 260.107 kb on - strand, within OHPLBJKB_00238at 260.107 kb on - strand, within OHPLBJKB_00238at 260.110 kb on + strand, within OHPLBJKB_00238at 260.110 kb on + strand, within OHPLBJKB_00238at 260.167 kb on + strand, within OHPLBJKB_00238at 260.168 kb on - strand, within OHPLBJKB_00238at 260.173 kb on - strand, within OHPLBJKB_00238at 260.262 kb on + strandat 260.263 kb on - strandat 260.269 kb on + strandat 260.269 kb on + strandat 260.270 kb on - strandat 260.270 kb on - strandat 260.270 kb on - strandat 260.270 kb on - strandat 260.270 kb on - strandat 260.270 kb on - strandat 260.292 kb on + strandat 260.292 kb on + strandat 260.292 kb on + strandat 260.304 kb on + strandat 260.304 kb on + strandat 260.309 kb on + strandat 260.309 kb on + strandat 260.310 kb on + strandat 260.332 kb on + strandat 260.332 kb on + strandat 260.332 kb on + strandat 260.332 kb on + strandat 260.332 kb on + strandat 260.332 kb on + strandat 260.332 kb on + strandat 260.336 kb on + strandat 260.336 kb on + strandat 260.336 kb on + strandat 260.336 kb on + strandat 260.336 kb on + strandat 260.336 kb on + strandat 260.336 kb on + strandat 260.336 kb on + strandat 260.336 kb on + strandat 260.336 kb on + strandat 260.340 kb on + strandat 260.340 kb on + strandat 260.340 kb on + strandat 260.340 kb on + strandat 260.340 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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258,723 + OHPLBJKB_00235 0.75 +1.0
258,724 - OHPLBJKB_00235 0.75 +0.1
258,724 - OHPLBJKB_00235 0.75 +0.7
258,727 + OHPLBJKB_00235 0.75 -0.4
258,727 + OHPLBJKB_00235 0.75 +0.0
258,727 + OHPLBJKB_00235 0.75 -0.0
258,727 + OHPLBJKB_00235 0.75 +0.4
258,727 + OHPLBJKB_00235 0.75 +0.5
258,790 + OHPLBJKB_00235 0.85 +0.0
258,791 - OHPLBJKB_00235 0.86 +1.3
258,822 + -1.3
258,839 + -0.5
258,884 - -0.5
258,884 - -0.2
258,973 + +1.1
258,973 + -0.3
258,974 - -0.4
258,986 - -2.7
258,986 - +1.5
258,991 + -0.2
259,050 + +0.3
259,116 + OHPLBJKB_00236 0.26 -0.0
259,330 - OHPLBJKB_00236 0.86 +0.8
259,340 - OHPLBJKB_00236 0.89 -0.2
259,342 - OHPLBJKB_00236 0.89 +1.0
259,378 + -0.7
259,378 + -0.1
259,378 + -0.4
259,378 + -0.3
259,378 + -0.2
259,378 + -0.0
259,379 - -0.3
259,379 - -0.5
259,517 + OHPLBJKB_00237 0.50 -1.9
259,517 + OHPLBJKB_00237 0.50 -0.3
259,517 + OHPLBJKB_00237 0.50 +0.2
259,518 - OHPLBJKB_00237 0.50 +0.2
259,518 - OHPLBJKB_00237 0.50 +0.7
259,562 + OHPLBJKB_00237 0.66 +1.0
259,562 + OHPLBJKB_00237 0.66 -0.1
259,643 + +0.4
259,643 + -0.4
259,689 - -1.6
259,775 + OHPLBJKB_00238 0.22 -0.1
259,775 + OHPLBJKB_00238 0.22 -0.5
259,776 - OHPLBJKB_00238 0.22 -0.1
259,823 - OHPLBJKB_00238 0.30 +0.6
259,835 - OHPLBJKB_00238 0.32 -0.3
259,870 + OHPLBJKB_00238 0.38 -0.0
259,870 + OHPLBJKB_00238 0.38 -0.7
259,870 + OHPLBJKB_00238 0.38 -1.8
259,870 + OHPLBJKB_00238 0.38 +1.0
259,870 + OHPLBJKB_00238 0.38 +0.7
259,870 + OHPLBJKB_00238 0.38 -0.5
259,871 - OHPLBJKB_00238 0.38 -0.2
259,871 - OHPLBJKB_00238 0.38 -0.7
259,871 - OHPLBJKB_00238 0.38 -0.9
259,871 - OHPLBJKB_00238 0.38 +0.9
259,871 - OHPLBJKB_00238 0.38 +0.5
259,872 + OHPLBJKB_00238 0.39 -0.8
259,872 + OHPLBJKB_00238 0.39 +0.5
259,872 + OHPLBJKB_00238 0.39 -0.6
259,873 - OHPLBJKB_00238 0.39 -0.6
259,873 - OHPLBJKB_00238 0.39 -0.5
259,873 - OHPLBJKB_00238 0.39 -0.3
259,873 - OHPLBJKB_00238 0.39 -1.0
259,873 - OHPLBJKB_00238 0.39 +0.4
259,873 - OHPLBJKB_00238 0.39 +0.4
259,873 - OHPLBJKB_00238 0.39 +1.4
259,873 - OHPLBJKB_00238 0.39 -0.2
259,875 + OHPLBJKB_00238 0.39 -1.2
259,875 + OHPLBJKB_00238 0.39 -0.7
259,875 + OHPLBJKB_00238 0.39 -0.0
259,876 - OHPLBJKB_00238 0.39 -0.0
259,876 - OHPLBJKB_00238 0.39 -2.2
259,877 + OHPLBJKB_00238 0.39 -1.0
259,877 + OHPLBJKB_00238 0.39 +0.1
259,877 + OHPLBJKB_00238 0.39 +0.2
259,877 + OHPLBJKB_00238 0.39 -0.5
259,877 + OHPLBJKB_00238 0.39 +1.1
259,877 + OHPLBJKB_00238 0.39 +1.2
259,877 + OHPLBJKB_00238 0.39 +0.0
259,877 + OHPLBJKB_00238 0.39 -0.5
259,877 + OHPLBJKB_00238 0.39 +0.8
259,877 + OHPLBJKB_00238 0.39 -1.4
259,878 - OHPLBJKB_00238 0.40 +0.1
259,878 - OHPLBJKB_00238 0.40 -0.0
259,878 - OHPLBJKB_00238 0.40 -1.4
259,878 - OHPLBJKB_00238 0.40 +1.3
259,878 - OHPLBJKB_00238 0.40 -0.4
259,878 - OHPLBJKB_00238 0.40 +0.9
259,925 - OHPLBJKB_00238 0.47 +0.7
259,945 + OHPLBJKB_00238 0.51 -0.4
259,946 - OHPLBJKB_00238 0.51 -0.2
259,962 + OHPLBJKB_00238 0.54 -0.6
259,963 - OHPLBJKB_00238 0.54 +1.1
259,967 - OHPLBJKB_00238 0.54 +0.2
259,967 - OHPLBJKB_00238 0.54 -0.2
259,967 - OHPLBJKB_00238 0.54 +1.3
260,019 - OHPLBJKB_00238 0.63 -1.4
260,106 + OHPLBJKB_00238 0.78 -0.7
260,106 + OHPLBJKB_00238 0.78 +0.1
260,106 + OHPLBJKB_00238 0.78 +0.2
260,107 - OHPLBJKB_00238 0.78 -0.1
260,107 - OHPLBJKB_00238 0.78 -0.5
260,107 - OHPLBJKB_00238 0.78 +1.3
260,110 + OHPLBJKB_00238 0.78 -0.9
260,110 + OHPLBJKB_00238 0.78 -3.0
260,167 + OHPLBJKB_00238 0.88 -0.4
260,168 - OHPLBJKB_00238 0.88 -0.0
260,173 - OHPLBJKB_00238 0.89 -1.3
260,262 + -0.4
260,263 - -1.0
260,269 + +0.1
260,269 + -0.3
260,270 - -0.0
260,270 - -1.0
260,270 - +1.0
260,270 - +0.0
260,270 - -1.9
260,270 - +0.3
260,292 + -0.9
260,292 + -0.5
260,292 + +0.1
260,304 + -1.3
260,304 + -1.3
260,309 + +1.1
260,309 + +0.2
260,310 + -0.5
260,332 + -0.2
260,332 + -1.1
260,332 + -0.5
260,332 + -2.2
260,332 + -0.6
260,332 + +0.3
260,332 + -0.8
260,336 + +0.0
260,336 + -0.6
260,336 + -0.1
260,336 + -1.3
260,336 + +0.6
260,336 + -1.4
260,336 + -0.0
260,336 + -1.2
260,336 + +0.0
260,336 + +0.7
260,340 + +0.0
260,340 + -0.0
260,340 + -1.0
260,340 + -0.7
260,340 + +0.3

Or see this region's nucleotide sequence