Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00048

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00047 and OHPLBJKB_00048 are separated by 279 nucleotidesOHPLBJKB_00048 and OHPLBJKB_00049 are separated by 168 nucleotides OHPLBJKB_00047: OHPLBJKB_00047 - Xanthine permease XanP, at 50,982 to 52,373 _00047 OHPLBJKB_00048: OHPLBJKB_00048 - Sodium/glutamate symporter, at 52,653 to 53,858 _00048 OHPLBJKB_00049: OHPLBJKB_00049 - ATP-dependent DNA helicase RecG, at 54,027 to 56,108 _00049 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.715 kb on - strand, within OHPLBJKB_00047at 51.718 kb on + strand, within OHPLBJKB_00047at 51.718 kb on + strand, within OHPLBJKB_00047at 51.719 kb on - strand, within OHPLBJKB_00047at 51.725 kb on + strand, within OHPLBJKB_00047at 51.726 kb on - strand, within OHPLBJKB_00047at 51.726 kb on - strand, within OHPLBJKB_00047at 51.750 kb on + strand, within OHPLBJKB_00047at 51.750 kb on + strand, within OHPLBJKB_00047at 51.750 kb on + strand, within OHPLBJKB_00047at 51.751 kb on - strand, within OHPLBJKB_00047at 51.902 kb on + strand, within OHPLBJKB_00047at 51.903 kb on - strand, within OHPLBJKB_00047at 51.903 kb on - strand, within OHPLBJKB_00047at 51.903 kb on - strand, within OHPLBJKB_00047at 51.906 kb on - strand, within OHPLBJKB_00047at 51.995 kb on + strand, within OHPLBJKB_00047at 51.996 kb on - strand, within OHPLBJKB_00047at 52.076 kb on + strand, within OHPLBJKB_00047at 52.113 kb on - strand, within OHPLBJKB_00047at 52.154 kb on + strand, within OHPLBJKB_00047at 52.154 kb on + strand, within OHPLBJKB_00047at 52.154 kb on + strand, within OHPLBJKB_00047at 52.154 kb on + strand, within OHPLBJKB_00047at 52.154 kb on + strand, within OHPLBJKB_00047at 52.154 kb on + strand, within OHPLBJKB_00047at 52.154 kb on + strand, within OHPLBJKB_00047at 52.154 kb on + strand, within OHPLBJKB_00047at 52.154 kb on + strand, within OHPLBJKB_00047at 52.155 kb on - strand, within OHPLBJKB_00047at 52.155 kb on - strand, within OHPLBJKB_00047at 52.155 kb on - strand, within OHPLBJKB_00047at 52.155 kb on - strand, within OHPLBJKB_00047at 52.155 kb on - strand, within OHPLBJKB_00047at 52.157 kb on + strand, within OHPLBJKB_00047at 52.157 kb on + strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.158 kb on - strand, within OHPLBJKB_00047at 52.160 kb on + strand, within OHPLBJKB_00047at 52.160 kb on + strand, within OHPLBJKB_00047at 52.160 kb on + strand, within OHPLBJKB_00047at 52.160 kb on + strand, within OHPLBJKB_00047at 52.161 kb on - strand, within OHPLBJKB_00047at 52.210 kb on - strand, within OHPLBJKB_00047at 52.408 kb on + strandat 52.409 kb on - strandat 52.453 kb on - strandat 52.470 kb on - strandat 52.562 kb on + strandat 52.563 kb on - strandat 52.579 kb on + strandat 52.579 kb on + strandat 52.579 kb on + strandat 52.579 kb on + strandat 52.579 kb on + strandat 52.580 kb on - strandat 52.580 kb on - strandat 52.610 kb on + strandat 52.610 kb on + strandat 52.610 kb on + strandat 52.611 kb on - strandat 52.611 kb on - strandat 52.620 kb on - strandat 52.639 kb on - strandat 52.648 kb on + strandat 52.648 kb on + strandat 52.648 kb on + strandat 52.649 kb on - strandat 52.649 kb on - strandat 52.649 kb on - strandat 52.649 kb on - strandat 52.652 kb on + strandat 52.652 kb on + strandat 52.652 kb on + strandat 52.653 kb on - strandat 52.653 kb on - strandat 52.653 kb on - strandat 52.653 kb on - strandat 52.653 kb on - strandat 52.653 kb on - strandat 52.667 kb on + strandat 52.667 kb on + strandat 52.673 kb on - strandat 52.749 kb on + strandat 52.749 kb on + strandat 52.749 kb on + strandat 52.749 kb on + strandat 52.749 kb on + strandat 52.750 kb on - strandat 52.750 kb on - strandat 52.750 kb on - strandat 52.750 kb on - strandat 52.841 kb on + strand, within OHPLBJKB_00048at 52.841 kb on + strand, within OHPLBJKB_00048at 52.842 kb on - strand, within OHPLBJKB_00048at 53.046 kb on - strand, within OHPLBJKB_00048at 53.046 kb on - strand, within OHPLBJKB_00048at 53.046 kb on - strand, within OHPLBJKB_00048at 53.046 kb on - strand, within OHPLBJKB_00048at 53.087 kb on + strand, within OHPLBJKB_00048at 53.088 kb on - strand, within OHPLBJKB_00048at 53.106 kb on + strand, within OHPLBJKB_00048at 53.197 kb on - strand, within OHPLBJKB_00048at 53.327 kb on + strand, within OHPLBJKB_00048at 53.328 kb on - strand, within OHPLBJKB_00048at 53.405 kb on - strand, within OHPLBJKB_00048at 53.405 kb on - strand, within OHPLBJKB_00048at 53.454 kb on + strand, within OHPLBJKB_00048at 53.455 kb on - strand, within OHPLBJKB_00048at 53.494 kb on + strand, within OHPLBJKB_00048at 53.494 kb on + strand, within OHPLBJKB_00048at 53.494 kb on + strand, within OHPLBJKB_00048at 53.494 kb on + strand, within OHPLBJKB_00048at 53.494 kb on + strand, within OHPLBJKB_00048at 53.494 kb on + strand, within OHPLBJKB_00048at 53.494 kb on + strand, within OHPLBJKB_00048at 53.495 kb on - strand, within OHPLBJKB_00048at 53.495 kb on - strand, within OHPLBJKB_00048at 53.587 kb on + strand, within OHPLBJKB_00048at 53.610 kb on + strand, within OHPLBJKB_00048at 53.610 kb on + strand, within OHPLBJKB_00048at 53.610 kb on + strand, within OHPLBJKB_00048at 53.610 kb on + strand, within OHPLBJKB_00048at 53.610 kb on + strand, within OHPLBJKB_00048at 53.610 kb on + strand, within OHPLBJKB_00048at 53.611 kb on - strand, within OHPLBJKB_00048at 53.611 kb on - strand, within OHPLBJKB_00048at 53.611 kb on - strand, within OHPLBJKB_00048at 53.611 kb on - strand, within OHPLBJKB_00048at 53.649 kb on + strand, within OHPLBJKB_00048at 53.818 kb on + strandat 53.819 kb on - strandat 53.822 kb on + strandat 53.822 kb on + strandat 53.822 kb on + strandat 53.822 kb on + strandat 53.822 kb on + strandat 53.822 kb on + strandat 53.822 kb on + strandat 53.822 kb on + strandat 53.823 kb on - strandat 53.823 kb on - strandat 53.823 kb on - strandat 53.823 kb on - strandat 53.823 kb on - strandat 53.823 kb on - strandat 53.829 kb on + strandat 53.829 kb on + strandat 53.829 kb on + strandat 53.829 kb on + strandat 53.829 kb on + strandat 53.829 kb on + strandat 53.829 kb on + strandat 53.830 kb on - strandat 53.908 kb on + strandat 53.932 kb on + strandat 53.943 kb on - strandat 53.947 kb on + strandat 53.958 kb on + strandat 53.958 kb on + strandat 53.993 kb on + strandat 54.029 kb on - strandat 54.069 kb on + strandat 54.070 kb on - strandat 54.355 kb on - strand, within OHPLBJKB_00049at 54.376 kb on - strand, within OHPLBJKB_00049at 54.477 kb on + strand, within OHPLBJKB_00049at 54.478 kb on - strand, within OHPLBJKB_00049at 54.541 kb on - strand, within OHPLBJKB_00049at 54.638 kb on + strand, within OHPLBJKB_00049at 54.639 kb on - strand, within OHPLBJKB_00049at 54.639 kb on - strand, within OHPLBJKB_00049at 54.670 kb on - strand, within OHPLBJKB_00049at 54.695 kb on + strand, within OHPLBJKB_00049at 54.731 kb on + strand, within OHPLBJKB_00049at 54.765 kb on + strand, within OHPLBJKB_00049at 54.765 kb on + strand, within OHPLBJKB_00049at 54.765 kb on + strand, within OHPLBJKB_00049at 54.765 kb on + strand, within OHPLBJKB_00049at 54.766 kb on - strand, within OHPLBJKB_00049at 54.766 kb on - strand, within OHPLBJKB_00049at 54.766 kb on - strand, within OHPLBJKB_00049at 54.791 kb on - strand, within OHPLBJKB_00049at 54.791 kb on - strand, within OHPLBJKB_00049

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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51,715 - OHPLBJKB_00047 0.53 +0.7
51,718 + OHPLBJKB_00047 0.53 -0.2
51,718 + OHPLBJKB_00047 0.53 -0.3
51,719 - OHPLBJKB_00047 0.53 +0.6
51,725 + OHPLBJKB_00047 0.53 -0.2
51,726 - OHPLBJKB_00047 0.53 -1.8
51,726 - OHPLBJKB_00047 0.53 -0.0
51,750 + OHPLBJKB_00047 0.55 -0.3
51,750 + OHPLBJKB_00047 0.55 +0.6
51,750 + OHPLBJKB_00047 0.55 +0.2
51,751 - OHPLBJKB_00047 0.55 +0.1
51,902 + OHPLBJKB_00047 0.66 -0.3
51,903 - OHPLBJKB_00047 0.66 -0.9
51,903 - OHPLBJKB_00047 0.66 -0.7
51,903 - OHPLBJKB_00047 0.66 -0.4
51,906 - OHPLBJKB_00047 0.66 +0.5
51,995 + OHPLBJKB_00047 0.73 -0.5
51,996 - OHPLBJKB_00047 0.73 -0.3
52,076 + OHPLBJKB_00047 0.79 -0.0
52,113 - OHPLBJKB_00047 0.81 +0.7
52,154 + OHPLBJKB_00047 0.84 +0.9
52,154 + OHPLBJKB_00047 0.84 -0.8
52,154 + OHPLBJKB_00047 0.84 -0.5
52,154 + OHPLBJKB_00047 0.84 -0.5
52,154 + OHPLBJKB_00047 0.84 +0.1
52,154 + OHPLBJKB_00047 0.84 -0.5
52,154 + OHPLBJKB_00047 0.84 -1.1
52,154 + OHPLBJKB_00047 0.84 -0.1
52,154 + OHPLBJKB_00047 0.84 -0.6
52,155 - OHPLBJKB_00047 0.84 -0.0
52,155 - OHPLBJKB_00047 0.84 -1.8
52,155 - OHPLBJKB_00047 0.84 +0.6
52,155 - OHPLBJKB_00047 0.84 +0.1
52,155 - OHPLBJKB_00047 0.84 -1.6
52,157 + OHPLBJKB_00047 0.84 +0.3
52,157 + OHPLBJKB_00047 0.84 -0.5
52,158 - OHPLBJKB_00047 0.84 -0.7
52,158 - OHPLBJKB_00047 0.84 -0.5
52,158 - OHPLBJKB_00047 0.84 -0.3
52,158 - OHPLBJKB_00047 0.84 +0.5
52,158 - OHPLBJKB_00047 0.84 -2.5
52,158 - OHPLBJKB_00047 0.84 -0.1
52,158 - OHPLBJKB_00047 0.84 +0.1
52,158 - OHPLBJKB_00047 0.84 +0.9
52,158 - OHPLBJKB_00047 0.84 -0.3
52,158 - OHPLBJKB_00047 0.84 +0.2
52,158 - OHPLBJKB_00047 0.84 +1.1
52,158 - OHPLBJKB_00047 0.84 -0.3
52,160 + OHPLBJKB_00047 0.85 +0.0
52,160 + OHPLBJKB_00047 0.85 -0.2
52,160 + OHPLBJKB_00047 0.85 -1.2
52,160 + OHPLBJKB_00047 0.85 -0.2
52,161 - OHPLBJKB_00047 0.85 -0.8
52,210 - OHPLBJKB_00047 0.88 -0.2
52,408 + +0.4
52,409 - +0.5
52,453 - -0.6
52,470 - -0.8
52,562 + +1.1
52,563 - +0.7
52,579 + -0.4
52,579 + +0.4
52,579 + -0.3
52,579 + +0.2
52,579 + -2.7
52,580 - +0.5
52,580 - +0.3
52,610 + -0.6
52,610 + -0.6
52,610 + -0.2
52,611 - -1.1
52,611 - -0.6
52,620 - +1.3
52,639 - +0.1
52,648 + -0.7
52,648 + -0.8
52,648 + -0.4
52,649 - +0.1
52,649 - -0.3
52,649 - -0.8
52,649 - -0.7
52,652 + -1.1
52,652 + +1.0
52,652 + -0.7
52,653 - -0.0
52,653 - -0.5
52,653 - +0.3
52,653 - -0.9
52,653 - -0.0
52,653 - +0.9
52,667 + +0.4
52,667 + +1.1
52,673 - -0.3
52,749 + +0.5
52,749 + -1.2
52,749 + -0.1
52,749 + +0.9
52,749 + -0.4
52,750 - -0.1
52,750 - +1.9
52,750 - -1.3
52,750 - -0.3
52,841 + OHPLBJKB_00048 0.16 +0.8
52,841 + OHPLBJKB_00048 0.16 -0.9
52,842 - OHPLBJKB_00048 0.16 -0.3
53,046 - OHPLBJKB_00048 0.33 +0.8
53,046 - OHPLBJKB_00048 0.33 -0.7
53,046 - OHPLBJKB_00048 0.33 -1.9
53,046 - OHPLBJKB_00048 0.33 -2.3
53,087 + OHPLBJKB_00048 0.36 -0.3
53,088 - OHPLBJKB_00048 0.36 -1.5
53,106 + OHPLBJKB_00048 0.38 +0.4
53,197 - OHPLBJKB_00048 0.45 -0.4
53,327 + OHPLBJKB_00048 0.56 -0.9
53,328 - OHPLBJKB_00048 0.56 -0.8
53,405 - OHPLBJKB_00048 0.62 +0.9
53,405 - OHPLBJKB_00048 0.62 -0.2
53,454 + OHPLBJKB_00048 0.66 -0.5
53,455 - OHPLBJKB_00048 0.67 -0.1
53,494 + OHPLBJKB_00048 0.70 -1.4
53,494 + OHPLBJKB_00048 0.70 +0.4
53,494 + OHPLBJKB_00048 0.70 -0.9
53,494 + OHPLBJKB_00048 0.70 -0.0
53,494 + OHPLBJKB_00048 0.70 -0.7
53,494 + OHPLBJKB_00048 0.70 +0.4
53,494 + OHPLBJKB_00048 0.70 -0.9
53,495 - OHPLBJKB_00048 0.70 -0.5
53,495 - OHPLBJKB_00048 0.70 -0.3
53,587 + OHPLBJKB_00048 0.77 -0.2
53,610 + OHPLBJKB_00048 0.79 +0.5
53,610 + OHPLBJKB_00048 0.79 +0.5
53,610 + OHPLBJKB_00048 0.79 -0.3
53,610 + OHPLBJKB_00048 0.79 +0.5
53,610 + OHPLBJKB_00048 0.79 -2.1
53,610 + OHPLBJKB_00048 0.79 -1.1
53,611 - OHPLBJKB_00048 0.79 -0.4
53,611 - OHPLBJKB_00048 0.79 -0.0
53,611 - OHPLBJKB_00048 0.79 -0.2
53,611 - OHPLBJKB_00048 0.79 +0.9
53,649 + OHPLBJKB_00048 0.83 -1.6
53,818 + -1.7
53,819 - -0.1
53,822 + -1.1
53,822 + -0.8
53,822 + +1.3
53,822 + -0.5
53,822 + -0.3
53,822 + +0.7
53,822 + +0.3
53,822 + +0.1
53,823 - -1.3
53,823 - -0.0
53,823 - +0.6
53,823 - -0.9
53,823 - -1.1
53,823 - +0.4
53,829 + +0.7
53,829 + +0.7
53,829 + +0.4
53,829 + -0.3
53,829 + -0.4
53,829 + -1.1
53,829 + -0.9
53,830 - +0.9
53,908 + +0.1
53,932 + +0.6
53,943 - -1.0
53,947 + +1.3
53,958 + -1.4
53,958 + -0.3
53,993 + +0.4
54,029 - -1.1
54,069 + -1.0
54,070 - +0.4
54,355 - OHPLBJKB_00049 0.16 -0.3
54,376 - OHPLBJKB_00049 0.17 -1.3
54,477 + OHPLBJKB_00049 0.22 -0.7
54,478 - OHPLBJKB_00049 0.22 +0.1
54,541 - OHPLBJKB_00049 0.25 +0.3
54,638 + OHPLBJKB_00049 0.29 +0.5
54,639 - OHPLBJKB_00049 0.29 -0.0
54,639 - OHPLBJKB_00049 0.29 -0.6
54,670 - OHPLBJKB_00049 0.31 -0.1
54,695 + OHPLBJKB_00049 0.32 -0.3
54,731 + OHPLBJKB_00049 0.34 -0.4
54,765 + OHPLBJKB_00049 0.35 -0.2
54,765 + OHPLBJKB_00049 0.35 +1.3
54,765 + OHPLBJKB_00049 0.35 -0.0
54,765 + OHPLBJKB_00049 0.35 -0.3
54,766 - OHPLBJKB_00049 0.35 -0.7
54,766 - OHPLBJKB_00049 0.35 +0.5
54,766 - OHPLBJKB_00049 0.35 -2.2
54,791 - OHPLBJKB_00049 0.37 -0.1
54,791 - OHPLBJKB_00049 0.37 -1.6

Or see this region's nucleotide sequence