Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00031

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00029 and OHPLBJKB_00030 are separated by 3 nucleotidesOHPLBJKB_00030 and OHPLBJKB_00031 are separated by 74 nucleotidesOHPLBJKB_00031 and OHPLBJKB_00032 overlap by 1 nucleotides OHPLBJKB_00029: OHPLBJKB_00029 - Acetolactate synthase isozyme 1 large subunit, at 28,536 to 30,224 _00029 OHPLBJKB_00030: OHPLBJKB_00030 - Acetolactate synthase isozyme 1 small subunit, at 30,228 to 30,518 _00030 OHPLBJKB_00031: OHPLBJKB_00031 - Transcriptional regulatory protein UhpA, at 30,593 to 31,183 _00031 OHPLBJKB_00032: OHPLBJKB_00032 - Signal transduction histidine-protein kinase/phosphatase UhpB, at 31,183 to 32,685 _00032 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1at 29.886 kb on - strand, within OHPLBJKB_00029at 29.989 kb on - strand, within OHPLBJKB_00029at 30.036 kb on - strand, within OHPLBJKB_00029at 30.080 kb on + strandat 30.223 kb on - strandat 30.253 kb on + strandat 30.253 kb on + strandat 30.254 kb on - strandat 30.381 kb on - strand, within OHPLBJKB_00030at 30.381 kb on - strand, within OHPLBJKB_00030at 30.467 kb on + strand, within OHPLBJKB_00030at 30.468 kb on - strand, within OHPLBJKB_00030at 30.558 kb on + strandat 30.558 kb on + strandat 30.559 kb on - strandat 30.559 kb on - strandat 30.559 kb on - strandat 30.610 kb on + strandat 30.610 kb on + strandat 30.610 kb on + strandat 30.611 kb on - strandat 30.612 kb on + strandat 30.612 kb on + strandat 30.613 kb on - strandat 30.678 kb on + strand, within OHPLBJKB_00031at 30.678 kb on + strand, within OHPLBJKB_00031at 30.678 kb on + strand, within OHPLBJKB_00031at 30.678 kb on + strand, within OHPLBJKB_00031at 30.679 kb on - strand, within OHPLBJKB_00031at 30.679 kb on - strand, within OHPLBJKB_00031at 30.679 kb on - strand, within OHPLBJKB_00031at 30.679 kb on - strand, within OHPLBJKB_00031at 30.745 kb on + strand, within OHPLBJKB_00031at 30.745 kb on + strand, within OHPLBJKB_00031at 30.745 kb on + strand, within OHPLBJKB_00031at 30.746 kb on - strand, within OHPLBJKB_00031at 30.789 kb on + strand, within OHPLBJKB_00031at 30.790 kb on - strand, within OHPLBJKB_00031at 30.808 kb on + strand, within OHPLBJKB_00031at 30.820 kb on + strand, within OHPLBJKB_00031at 30.820 kb on + strand, within OHPLBJKB_00031at 30.932 kb on - strand, within OHPLBJKB_00031at 30.932 kb on - strand, within OHPLBJKB_00031at 30.953 kb on + strand, within OHPLBJKB_00031at 30.976 kb on + strand, within OHPLBJKB_00031at 30.977 kb on - strand, within OHPLBJKB_00031at 30.977 kb on - strand, within OHPLBJKB_00031at 31.099 kb on - strand, within OHPLBJKB_00031at 31.150 kb on - strandat 31.205 kb on + strandat 31.205 kb on + strandat 31.205 kb on + strandat 31.205 kb on + strandat 31.205 kb on + strandat 31.206 kb on - strandat 31.206 kb on - strandat 31.206 kb on - strandat 31.206 kb on - strandat 31.263 kb on + strandat 31.308 kb on - strandat 31.397 kb on - strand, within OHPLBJKB_00032at 31.643 kb on + strand, within OHPLBJKB_00032at 31.643 kb on + strand, within OHPLBJKB_00032at 31.663 kb on + strand, within OHPLBJKB_00032at 31.664 kb on - strand, within OHPLBJKB_00032at 31.675 kb on - strand, within OHPLBJKB_00032at 31.747 kb on + strand, within OHPLBJKB_00032at 31.747 kb on + strand, within OHPLBJKB_00032at 31.858 kb on + strand, within OHPLBJKB_00032at 32.019 kb on + strand, within OHPLBJKB_00032at 32.019 kb on + strand, within OHPLBJKB_00032at 32.019 kb on + strand, within OHPLBJKB_00032at 32.148 kb on + strand, within OHPLBJKB_00032at 32.154 kb on + strand, within OHPLBJKB_00032

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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29,886 - OHPLBJKB_00029 0.80 -0.3
29,989 - OHPLBJKB_00029 0.86 -0.7
30,036 - OHPLBJKB_00029 0.89 +0.5
30,080 + +0.0
30,223 - +0.6
30,253 + -1.0
30,253 + +0.3
30,254 - +0.4
30,381 - OHPLBJKB_00030 0.53 -0.9
30,381 - OHPLBJKB_00030 0.53 +0.4
30,467 + OHPLBJKB_00030 0.82 +0.6
30,468 - OHPLBJKB_00030 0.82 -1.5
30,558 + -0.8
30,558 + +0.7
30,559 - -0.7
30,559 - -0.7
30,559 - -0.1
30,610 + -1.0
30,610 + +0.1
30,610 + -0.5
30,611 - +0.9
30,612 + +0.2
30,612 + +0.4
30,613 - -0.9
30,678 + OHPLBJKB_00031 0.14 +0.5
30,678 + OHPLBJKB_00031 0.14 -0.0
30,678 + OHPLBJKB_00031 0.14 -1.7
30,678 + OHPLBJKB_00031 0.14 -0.1
30,679 - OHPLBJKB_00031 0.15 +1.4
30,679 - OHPLBJKB_00031 0.15 +0.4
30,679 - OHPLBJKB_00031 0.15 -0.5
30,679 - OHPLBJKB_00031 0.15 +0.7
30,745 + OHPLBJKB_00031 0.26 -0.7
30,745 + OHPLBJKB_00031 0.26 +0.1
30,745 + OHPLBJKB_00031 0.26 -0.2
30,746 - OHPLBJKB_00031 0.26 -0.5
30,789 + OHPLBJKB_00031 0.33 +0.1
30,790 - OHPLBJKB_00031 0.33 -0.6
30,808 + OHPLBJKB_00031 0.36 +0.7
30,820 + OHPLBJKB_00031 0.38 -1.3
30,820 + OHPLBJKB_00031 0.38 -0.1
30,932 - OHPLBJKB_00031 0.57 +0.5
30,932 - OHPLBJKB_00031 0.57 -0.9
30,953 + OHPLBJKB_00031 0.61 -0.9
30,976 + OHPLBJKB_00031 0.65 +1.2
30,977 - OHPLBJKB_00031 0.65 +0.6
30,977 - OHPLBJKB_00031 0.65 +1.6
31,099 - OHPLBJKB_00031 0.86 +0.5
31,150 - +0.5
31,205 + -1.1
31,205 + -0.9
31,205 + -0.3
31,205 + +0.1
31,205 + -1.2
31,206 - -0.1
31,206 - +1.1
31,206 - +0.5
31,206 - +0.1
31,263 + +0.3
31,308 - -0.2
31,397 - OHPLBJKB_00032 0.14 +0.3
31,643 + OHPLBJKB_00032 0.31 +1.7
31,643 + OHPLBJKB_00032 0.31 +0.1
31,663 + OHPLBJKB_00032 0.32 +0.8
31,664 - OHPLBJKB_00032 0.32 +0.1
31,675 - OHPLBJKB_00032 0.33 +0.1
31,747 + OHPLBJKB_00032 0.38 +0.3
31,747 + OHPLBJKB_00032 0.38 -2.1
31,858 + OHPLBJKB_00032 0.45 +0.4
32,019 + OHPLBJKB_00032 0.56 -1.2
32,019 + OHPLBJKB_00032 0.56 +0.2
32,019 + OHPLBJKB_00032 0.56 +0.6
32,148 + OHPLBJKB_00032 0.64 +1.1
32,154 + OHPLBJKB_00032 0.65 -0.1

Or see this region's nucleotide sequence