Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26090 and LU632_RS26095 overlap by 4 nucleotides LU632_RS26095 and LU632_RS26100 are separated by 7 nucleotides LU632_RS26100 and LU632_RS26105 are separated by 16 nucleotides LU632_RS26105 and LU632_RS26110 are separated by 444 nucleotides
LU632_RS26090: LU632_RS26090 - DUF2514 domain-containing protein, at 25,092 to 25,613
_RS26090
LU632_RS26095: LU632_RS26095 - lysozyme, at 25,610 to 26,035
_RS26095
LU632_RS26100: LU632_RS26100 - phage holin family protein, at 26,043 to 26,345
_RS26100
LU632_RS26105: LU632_RS26105 - hypothetical protein, at 26,362 to 26,520
_RS26105
LU632_RS26110: LU632_RS26110 - ParA family protein, at 26,965 to 27,588
_RS26110
Position (kb) 26
27 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 25.080 kb on + strand at 25.363 kb on - strand, within LU632_RS26090 at 25.508 kb on + strand, within LU632_RS26090 at 25.508 kb on + strand, within LU632_RS26090 at 25.508 kb on + strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.509 kb on - strand, within LU632_RS26090 at 25.523 kb on + strand, within LU632_RS26090 at 25.523 kb on + strand, within LU632_RS26090 at 25.616 kb on + strand at 25.617 kb on - strand at 25.625 kb on - strand at 25.716 kb on + strand, within LU632_RS26095 at 25.716 kb on + strand, within LU632_RS26095 at 25.717 kb on - strand, within LU632_RS26095 at 25.747 kb on + strand, within LU632_RS26095 at 25.748 kb on - strand, within LU632_RS26095 at 25.748 kb on - strand, within LU632_RS26095 at 25.748 kb on - strand, within LU632_RS26095 at 25.748 kb on - strand, within LU632_RS26095 at 25.762 kb on + strand, within LU632_RS26095 at 25.839 kb on + strand, within LU632_RS26095 at 25.900 kb on + strand, within LU632_RS26095 at 25.901 kb on - strand, within LU632_RS26095 at 25.901 kb on - strand, within LU632_RS26095 at 25.903 kb on + strand, within LU632_RS26095 at 25.903 kb on + strand, within LU632_RS26095 at 25.903 kb on + strand, within LU632_RS26095 at 25.904 kb on - strand, within LU632_RS26095 at 25.904 kb on - strand, within LU632_RS26095 at 25.904 kb on - strand, within LU632_RS26095 at 25.904 kb on - strand, within LU632_RS26095 at 25.920 kb on - strand, within LU632_RS26095 at 25.971 kb on + strand, within LU632_RS26095 at 25.972 kb on - strand, within LU632_RS26095 at 25.972 kb on - strand, within LU632_RS26095 at 26.044 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.048 kb on + strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.049 kb on - strand at 26.097 kb on - strand, within LU632_RS26100 at 26.097 kb on - strand, within LU632_RS26100 at 26.308 kb on - strand, within LU632_RS26100 at 26.367 kb on + strand at 26.367 kb on + strand at 26.525 kb on + strand at 26.658 kb on + strand at 26.698 kb on + strand at 26.698 kb on + strand at 26.699 kb on - strand at 26.863 kb on + strand at 26.898 kb on + strand at 27.003 kb on + strand at 27.004 kb on - strand at 27.015 kb on - strand at 27.134 kb on + strand, within LU632_RS26110 at 27.135 kb on - strand, within LU632_RS26110 at 27.135 kb on - strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1) remove 25,080 + -1.2 25,363 - LU632_RS26090 0.52 -0.3 25,508 + LU632_RS26090 0.80 -3.5 25,508 + LU632_RS26090 0.80 -2.7 25,508 + LU632_RS26090 0.80 +2.1 25,509 - LU632_RS26090 0.80 -3.5 25,509 - LU632_RS26090 0.80 -0.3 25,509 - LU632_RS26090 0.80 +1.7 25,509 - LU632_RS26090 0.80 -4.1 25,509 - LU632_RS26090 0.80 +0.0 25,523 + LU632_RS26090 0.83 +0.4 25,523 + LU632_RS26090 0.83 +1.1 25,616 + -2.1 25,617 - -0.8 25,625 - -3.9 25,716 + LU632_RS26095 0.25 -2.9 25,716 + LU632_RS26095 0.25 +0.4 25,717 - LU632_RS26095 0.25 -0.1 25,747 + LU632_RS26095 0.32 +1.0 25,748 - LU632_RS26095 0.32 -0.7 25,748 - LU632_RS26095 0.32 -3.1 25,748 - LU632_RS26095 0.32 -1.5 25,748 - LU632_RS26095 0.32 +0.9 25,762 + LU632_RS26095 0.36 -1.1 25,839 + LU632_RS26095 0.54 -2.4 25,900 + LU632_RS26095 0.68 -4.7 25,901 - LU632_RS26095 0.68 +1.3 25,901 - LU632_RS26095 0.68 -1.2 25,903 + LU632_RS26095 0.69 -0.2 25,903 + LU632_RS26095 0.69 +1.2 25,903 + LU632_RS26095 0.69 -0.5 25,904 - LU632_RS26095 0.69 -5.5 25,904 - LU632_RS26095 0.69 -1.3 25,904 - LU632_RS26095 0.69 -1.2 25,904 - LU632_RS26095 0.69 +1.3 25,920 - LU632_RS26095 0.73 -2.1 25,971 + LU632_RS26095 0.85 -0.9 25,972 - LU632_RS26095 0.85 -0.5 25,972 - LU632_RS26095 0.85 +1.7 26,044 + -1.2 26,048 + -2.2 26,048 + -1.7 26,048 + -0.7 26,048 + -0.9 26,048 + +1.6 26,048 + -0.9 26,048 + -3.9 26,049 - -2.8 26,049 - -1.6 26,049 - -1.0 26,049 - -5.3 26,049 - -2.1 26,049 - -1.7 26,049 - -1.5 26,049 - +1.8 26,049 - +4.1 26,097 - LU632_RS26100 0.18 -1.1 26,097 - LU632_RS26100 0.18 -3.0 26,308 - LU632_RS26100 0.87 -0.8 26,367 + -1.1 26,367 + -3.8 26,525 + -1.2 26,658 + -3.2 26,698 + -0.1 26,698 + +1.9 26,699 - -2.6 26,863 + +2.3 26,898 + -4.5 27,003 + -2.6 27,004 - -2.1 27,015 - +0.1 27,134 + LU632_RS26110 0.27 -0.8 27,135 - LU632_RS26110 0.27 +1.1 27,135 - LU632_RS26110 0.27 -4.5 27,215 + LU632_RS26110 0.40 -1.1 27,215 + LU632_RS26110 0.40 -0.1 27,215 + LU632_RS26110 0.40 -1.7 27,215 + LU632_RS26110 0.40 +1.1 27,215 + LU632_RS26110 0.40 -1.2 27,216 - LU632_RS26110 0.40 -1.2 27,216 - LU632_RS26110 0.40 -1.2 27,216 - LU632_RS26110 0.40 -1.5 27,216 - LU632_RS26110 0.40 -2.9 27,216 - LU632_RS26110 0.40 +0.1
Or see this region's nucleotide sequence