Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt traB and LU632_RS25820 are separated by 9 nucleotides LU632_RS25820 and LU632_RS25825 are separated by 11 nucleotides LU632_RS25825 and LU632_RS25830 are separated by 196 nucleotides LU632_RS25830 and LU632_RS25835 are separated by 222 nucleotides LU632_RS25835 and traC overlap by 4 nucleotides
LU632_RS25815: traB - F-type conjugal transfer pilus assembly protein TraB, at 13,576 to 14,937
traB
LU632_RS25820: LU632_RS25820 - hypothetical protein, at 14,947 to 15,108
_RS25820
LU632_RS25825: LU632_RS25825 - hypothetical protein, at 15,120 to 15,368
_RS25825
LU632_RS25830: LU632_RS25830 - hypothetical protein, at 15,565 to 15,705
_RS25830
LU632_RS25835: LU632_RS25835 - TraV family lipoprotein, at 15,928 to 16,308
_RS25835
LU632_RS25840: traC - type IV secretion system protein TraC, at 16,305 to 18,899
traC
Position (kb) 15
16
17 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 14.928 kb on + strand at 14.932 kb on - strand at 14.932 kb on - strand at 14.991 kb on - strand, within LU632_RS25820 at 15.010 kb on - strand, within LU632_RS25820 at 15.133 kb on + strand at 15.137 kb on + strand at 15.137 kb on + strand at 15.139 kb on + strand at 15.140 kb on - strand at 15.208 kb on + strand, within LU632_RS25825 at 15.209 kb on - strand, within LU632_RS25825 at 15.209 kb on - strand, within LU632_RS25825 at 15.209 kb on - strand, within LU632_RS25825 at 15.211 kb on + strand, within LU632_RS25825 at 15.220 kb on + strand, within LU632_RS25825 at 15.220 kb on + strand, within LU632_RS25825 at 15.220 kb on + strand, within LU632_RS25825 at 15.221 kb on - strand, within LU632_RS25825 at 15.381 kb on + strand at 15.394 kb on - strand at 15.438 kb on + strand at 15.531 kb on + strand at 15.644 kb on + strand, within LU632_RS25830 at 15.645 kb on - strand, within LU632_RS25830 at 15.655 kb on - strand, within LU632_RS25830 at 15.675 kb on - strand, within LU632_RS25830 at 15.830 kb on - strand at 15.831 kb on + strand at 15.831 kb on + strand at 15.832 kb on - strand at 15.832 kb on - strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.834 kb on - strand at 15.834 kb on - strand at 15.834 kb on - strand at 15.835 kb on + strand at 15.835 kb on + strand at 15.835 kb on + strand at 15.835 kb on + strand at 15.835 kb on + strand at 15.836 kb on - strand at 15.836 kb on - strand at 15.836 kb on - strand at 15.836 kb on - strand at 15.836 kb on - strand at 15.859 kb on - strand at 15.859 kb on - strand at 15.919 kb on - strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.921 kb on - strand at 15.922 kb on + strand at 15.922 kb on + strand at 15.922 kb on + strand at 15.923 kb on - strand at 15.928 kb on - strand at 15.933 kb on + strand at 16.008 kb on + strand, within LU632_RS25835 at 16.008 kb on + strand, within LU632_RS25835 at 16.008 kb on + strand, within LU632_RS25835 at 16.008 kb on + strand, within LU632_RS25835 at 16.008 kb on + strand, within LU632_RS25835 at 16.009 kb on - strand, within LU632_RS25835 at 16.032 kb on + strand, within LU632_RS25835 at 16.032 kb on + strand, within LU632_RS25835 at 16.033 kb on - strand, within LU632_RS25835 at 16.315 kb on + strand at 16.315 kb on + strand at 16.315 kb on + strand at 16.315 kb on + strand at 16.319 kb on + strand at 16.358 kb on + strand at 16.410 kb on + strand at 16.410 kb on + strand at 16.411 kb on - strand at 16.475 kb on + strand at 16.476 kb on - strand at 16.526 kb on + strand at 16.527 kb on - strand at 16.527 kb on - strand at 16.527 kb on - strand at 16.532 kb on + strand at 16.532 kb on + strand at 16.532 kb on + strand at 16.532 kb on + strand at 16.532 kb on + strand at 16.533 kb on - strand at 16.635 kb on + strand, within traC at 16.704 kb on + strand, within traC at 16.776 kb on + strand, within traC at 16.777 kb on - strand, within traC at 16.778 kb on + strand, within traC at 16.778 kb on + strand, within traC at 16.779 kb on - strand, within traC at 16.779 kb on - strand, within traC at 16.881 kb on + strand, within traC at 16.881 kb on + strand, within traC at 16.881 kb on + strand, within traC at 17.081 kb on - strand, within traC at 17.156 kb on + strand, within traC at 17.182 kb on + strand, within traC at 17.183 kb on - strand, within traC at 17.183 kb on - strand, within traC at 17.183 kb on - strand, within traC at 17.183 kb on - strand, within traC at 17.187 kb on - strand, within traC at 17.187 kb on - strand, within traC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1) remove 14,928 + -1.5 14,932 - -1.5 14,932 - -0.2 14,991 - LU632_RS25820 0.27 -0.3 15,010 - LU632_RS25820 0.39 +6.1 15,133 + +1.3 15,137 + +0.5 15,137 + -0.5 15,139 + -1.8 15,140 - +2.0 15,208 + LU632_RS25825 0.35 +4.0 15,209 - LU632_RS25825 0.36 -0.8 15,209 - LU632_RS25825 0.36 +0.8 15,209 - LU632_RS25825 0.36 +0.5 15,211 + LU632_RS25825 0.37 -0.5 15,220 + LU632_RS25825 0.40 +0.4 15,220 + LU632_RS25825 0.40 +4.1 15,220 + LU632_RS25825 0.40 +1.9 15,221 - LU632_RS25825 0.41 -3.0 15,381 + +2.8 15,394 - -2.0 15,438 + -3.4 15,531 + -1.2 15,644 + LU632_RS25830 0.56 -0.3 15,645 - LU632_RS25830 0.57 -0.3 15,655 - LU632_RS25830 0.64 +0.4 15,675 - LU632_RS25830 0.78 +0.6 15,830 - +1.7 15,831 + +0.5 15,831 + +0.8 15,832 - -1.5 15,832 - +0.2 15,833 + +0.8 15,833 + +1.2 15,833 + -2.0 15,833 + +3.7 15,833 + +0.4 15,833 + +5.2 15,833 + -0.5 15,833 + +0.5 15,834 - +0.5 15,834 - +0.4 15,834 - -0.3 15,835 + +0.5 15,835 + +0.2 15,835 + +0.1 15,835 + +1.2 15,835 + -0.6 15,836 - -3.6 15,836 - -0.5 15,836 - +0.8 15,836 - -3.2 15,836 - -0.1 15,859 - -1.4 15,859 - +0.8 15,919 - +2.0 15,920 + -1.8 15,920 + -2.6 15,920 + +1.0 15,921 - -3.2 15,922 + -1.2 15,922 + -1.0 15,922 + -0.2 15,923 - +1.9 15,928 - -0.6 15,933 + -2.5 16,008 + LU632_RS25835 0.21 +0.7 16,008 + LU632_RS25835 0.21 -1.8 16,008 + LU632_RS25835 0.21 -4.5 16,008 + LU632_RS25835 0.21 -0.3 16,008 + LU632_RS25835 0.21 -1.0 16,009 - LU632_RS25835 0.21 +0.5 16,032 + LU632_RS25835 0.27 +0.5 16,032 + LU632_RS25835 0.27 -0.4 16,033 - LU632_RS25835 0.28 -1.0 16,315 + -1.8 16,315 + -1.0 16,315 + -3.5 16,315 + -0.0 16,319 + -2.4 16,358 + +1.1 16,410 + +1.1 16,410 + -0.5 16,411 - +3.8 16,475 + +0.8 16,476 - -4.1 16,526 + -1.0 16,527 - -0.1 16,527 - +0.4 16,527 - +0.1 16,532 + +0.5 16,532 + +0.4 16,532 + -2.0 16,532 + +0.7 16,532 + -2.9 16,533 - +0.1 16,635 + traC LU632_RS25840 0.13 -0.9 16,704 + traC LU632_RS25840 0.15 +0.8 16,776 + traC LU632_RS25840 0.18 -1.3 16,777 - traC LU632_RS25840 0.18 -0.2 16,778 + traC LU632_RS25840 0.18 +0.2 16,778 + traC LU632_RS25840 0.18 +3.0 16,779 - traC LU632_RS25840 0.18 +1.9 16,779 - traC LU632_RS25840 0.18 -3.2 16,881 + traC LU632_RS25840 0.22 +0.3 16,881 + traC LU632_RS25840 0.22 -1.5 16,881 + traC LU632_RS25840 0.22 +1.3 17,081 - traC LU632_RS25840 0.30 +3.1 17,156 + traC LU632_RS25840 0.33 +1.4 17,182 + traC LU632_RS25840 0.34 +2.2 17,183 - traC LU632_RS25840 0.34 -3.0 17,183 - traC LU632_RS25840 0.34 +0.2 17,183 - traC LU632_RS25840 0.34 +4.8 17,183 - traC LU632_RS25840 0.34 -2.9 17,187 - traC LU632_RS25840 0.34 +0.4 17,187 - traC LU632_RS25840 0.34 +0.2
Or see this region's nucleotide sequence