Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25505

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
31,910	-				+0.9
31,934	+				-1.3
31,935	-				-1.0
31,935	-				+0.7
32,101	-		LU632_RS25495	0.50	-3.0
32,344	-		LU632_RS25500	0.28	-1.1
32,348	-		LU632_RS25500	0.29	-0.4
32,348	-		LU632_RS25500	0.29	+0.7
32,388	+		LU632_RS25500	0.40	-1.2
32,389	-		LU632_RS25500	0.41	+0.4
32,389	-		LU632_RS25500	0.41	+1.3
32,420	-		LU632_RS25500	0.50	-1.2
32,444	+		LU632_RS25500	0.57	-0.2
32,522	-		LU632_RS25500	0.79	-2.4
32,553	+		LU632_RS25500	0.88	+0.8
32,554	-		LU632_RS25500	0.88	+1.3
32,576	+				+0.8
32,579	-				+0.7
32,579	-				+0.6
32,579	-				+1.5
32,579	-				+1.2
32,583	-				-1.5
32,590	-				+0.1
32,590	-				-1.2
32,679	+				+3.3
32,679	+				+0.3
32,679	+				+1.7
32,679	+				+1.1
32,679	+				+1.1
32,679	+				+1.0
32,679	+				+0.7
32,679	+				+0.1
32,679	+				+0.5
32,679	+				-1.9
32,679	+				-0.9
32,680	-				-0.9
32,680	-				+3.0
32,680	-				+1.3
32,680	-				-0.2
32,680	-				+0.3
32,680	-				+1.5
32,680	-				+6.6
32,680	-				+0.1
32,680	-				-1.4
32,741	+				+2.5
32,741	+				-2.8
32,741	+				+1.4
32,741	+				+0.6
32,741	+				-1.1
32,741	+				-0.9
32,741	+				-0.5
32,741	+				+0.6
32,742	-				+0.3
32,742	-				+0.8
32,742	-				-0.2
32,742	-				+1.6
32,859	+				+0.1
32,928	+		LU632_RS25505	0.27	-1.5
32,929	+		LU632_RS25505	0.27	+3.2
32,929	-		LU632_RS25505	0.27	+0.8
32,962	+		LU632_RS25505	0.38	-0.9
33,096	+		LU632_RS25505	0.83	-0.9
33,096	+		LU632_RS25505	0.83	+0.1
33,096	+		LU632_RS25505	0.83	-1.4
33,096	+		LU632_RS25505	0.83	+0.8
33,096	+		LU632_RS25505	0.83	-0.2
33,096	+		LU632_RS25505	0.83	+1.0
33,096	+		LU632_RS25505	0.83	+0.4
33,096	+		LU632_RS25505	0.83	+1.9
33,097	-		LU632_RS25505	0.83	+1.2
33,097	-		LU632_RS25505	0.83	-1.7
33,097	-		LU632_RS25505	0.83	-0.9
33,097	-		LU632_RS25505	0.83	-0.2
33,097	-		LU632_RS25505	0.83	-0.1
33,097	-		LU632_RS25505	0.83	-2.8
33,097	-		LU632_RS25505	0.83	+0.3
33,149	+				+4.5
33,150	-				-1.7
33,347	+		LU632_RS25510	0.19	-2.2
33,364	+		LU632_RS25510	0.25	-0.4
33,364	+		LU632_RS25510	0.25	-0.2
33,364	+		LU632_RS25510	0.25	-0.5
33,364	+		LU632_RS25510	0.25	+2.3
33,364	+		LU632_RS25510	0.25	-4.3
33,365	-		LU632_RS25510	0.26	-1.2
33,365	-		LU632_RS25510	0.26	-0.2
33,365	-		LU632_RS25510	0.26	-0.9
33,391	+		LU632_RS25510	0.36	+0.8
33,474	+		LU632_RS25510	0.67	+1.3
33,482	+		LU632_RS25510	0.70	-0.5
33,482	+		LU632_RS25510	0.70	+1.1
33,482	+		LU632_RS25510	0.70	-0.5
33,482	+		LU632_RS25510	0.70	+1.1
33,483	-		LU632_RS25510	0.70	-0.6
33,483	-		LU632_RS25510	0.70	+1.1