Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23645

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS23640 and LU632_RS23645 overlap by 4 nucleotidesLU632_RS23645 and LU632_RS23650 are separated by 26 nucleotidesLU632_RS23650 and LU632_RS23655 are separated by 256 nucleotidesLU632_RS23655 and LU632_RS23660 overlap by 1 nucleotides LU632_RS23640: LU632_RS23640 - hypothetical protein, at 4,509,930 to 4,511,804 _RS23640 LU632_RS23645: LU632_RS23645 - GNAT family N-acetyltransferase, at 4,511,801 to 4,512,469 _RS23645 LU632_RS23650: LU632_RS23650 - DUF4158 domain-containing protein, at 4,512,496 to 4,512,618 _RS23650 LU632_RS23655: LU632_RS23655 - ribbon-helix-helix domain-containing protein, at 4,512,875 to 4,513,162 _RS23655 LU632_RS23660: LU632_RS23660 - peptide transporter, at 4,513,162 to 4,513,416 _RS23660 Position (kb) 4511 4512 4513Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4510.912 kb on - strand, within LU632_RS23640at 4510.912 kb on - strand, within LU632_RS23640at 4510.916 kb on - strand, within LU632_RS23640at 4510.917 kb on + strand, within LU632_RS23640at 4510.918 kb on - strand, within LU632_RS23640at 4511.232 kb on + strand, within LU632_RS23640at 4511.232 kb on + strand, within LU632_RS23640at 4511.233 kb on - strand, within LU632_RS23640at 4511.620 kb on + strandat 4511.779 kb on - strandat 4511.940 kb on - strand, within LU632_RS23645at 4511.949 kb on + strand, within LU632_RS23645at 4511.949 kb on + strand, within LU632_RS23645at 4511.949 kb on + strand, within LU632_RS23645at 4511.949 kb on + strand, within LU632_RS23645at 4511.949 kb on + strand, within LU632_RS23645at 4511.949 kb on + strand, within LU632_RS23645at 4511.950 kb on - strand, within LU632_RS23645at 4511.950 kb on - strand, within LU632_RS23645at 4511.950 kb on - strand, within LU632_RS23645at 4511.950 kb on - strand, within LU632_RS23645at 4511.950 kb on - strand, within LU632_RS23645at 4511.950 kb on - strand, within LU632_RS23645at 4511.950 kb on - strand, within LU632_RS23645at 4511.952 kb on + strand, within LU632_RS23645at 4511.952 kb on + strand, within LU632_RS23645at 4511.952 kb on + strand, within LU632_RS23645at 4511.953 kb on - strand, within LU632_RS23645at 4511.953 kb on - strand, within LU632_RS23645at 4511.953 kb on - strand, within LU632_RS23645at 4512.050 kb on - strand, within LU632_RS23645at 4512.074 kb on - strand, within LU632_RS23645at 4512.220 kb on - strand, within LU632_RS23645at 4512.232 kb on - strand, within LU632_RS23645at 4512.239 kb on + strand, within LU632_RS23645at 4512.240 kb on - strand, within LU632_RS23645at 4512.318 kb on + strand, within LU632_RS23645at 4512.319 kb on - strand, within LU632_RS23645at 4512.344 kb on + strand, within LU632_RS23645at 4512.344 kb on + strand, within LU632_RS23645at 4512.345 kb on - strand, within LU632_RS23645at 4512.345 kb on - strand, within LU632_RS23645at 4512.401 kb on + strand, within LU632_RS23645at 4512.401 kb on + strand, within LU632_RS23645at 4512.402 kb on - strand, within LU632_RS23645at 4512.403 kb on + strandat 4512.403 kb on + strandat 4512.403 kb on + strandat 4512.403 kb on + strandat 4512.403 kb on + strandat 4512.404 kb on - strandat 4512.422 kb on + strandat 4512.523 kb on + strand, within LU632_RS23650at 4512.526 kb on + strand, within LU632_RS23650at 4512.526 kb on + strand, within LU632_RS23650at 4512.527 kb on - strand, within LU632_RS23650at 4512.657 kb on + strandat 4512.699 kb on - strandat 4512.785 kb on - strandat 4512.852 kb on + strandat 4512.853 kb on - strandat 4512.876 kb on + strandat 4512.897 kb on + strandat 4512.914 kb on + strand, within LU632_RS23655at 4512.915 kb on - strand, within LU632_RS23655at 4512.915 kb on - strand, within LU632_RS23655at 4512.915 kb on - strand, within LU632_RS23655at 4512.934 kb on + strand, within LU632_RS23655at 4512.942 kb on - strand, within LU632_RS23655at 4512.986 kb on + strand, within LU632_RS23655at 4512.986 kb on + strand, within LU632_RS23655at 4512.987 kb on - strand, within LU632_RS23655at 4512.990 kb on - strand, within LU632_RS23655at 4513.076 kb on + strand, within LU632_RS23655at 4513.077 kb on - strand, within LU632_RS23655at 4513.084 kb on + strand, within LU632_RS23655at 4513.085 kb on - strand, within LU632_RS23655at 4513.089 kb on - strand, within LU632_RS23655at 4513.180 kb on - strandat 4513.189 kb on + strand, within LU632_RS23660at 4513.189 kb on + strand, within LU632_RS23660at 4513.189 kb on + strand, within LU632_RS23660at 4513.189 kb on + strand, within LU632_RS23660at 4513.349 kb on - strand, within LU632_RS23660at 4513.424 kb on - strandat 4513.446 kb on + strandat 4513.447 kb on - strandat 4513.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
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4,510,912 - LU632_RS23640 0.52 +0.6
4,510,912 - LU632_RS23640 0.52 -1.5
4,510,916 - LU632_RS23640 0.53 +0.4
4,510,917 + LU632_RS23640 0.53 +0.1
4,510,918 - LU632_RS23640 0.53 -1.6
4,511,232 + LU632_RS23640 0.69 +0.1
4,511,232 + LU632_RS23640 0.69 -1.2
4,511,233 - LU632_RS23640 0.69 -0.7
4,511,620 + +0.6
4,511,779 - +1.6
4,511,940 - LU632_RS23645 0.21 -0.3
4,511,949 + LU632_RS23645 0.22 -0.6
4,511,949 + LU632_RS23645 0.22 +1.0
4,511,949 + LU632_RS23645 0.22 +0.3
4,511,949 + LU632_RS23645 0.22 +1.0
4,511,949 + LU632_RS23645 0.22 +0.3
4,511,949 + LU632_RS23645 0.22 +0.0
4,511,950 - LU632_RS23645 0.22 -0.6
4,511,950 - LU632_RS23645 0.22 -2.0
4,511,950 - LU632_RS23645 0.22 +0.3
4,511,950 - LU632_RS23645 0.22 -2.7
4,511,950 - LU632_RS23645 0.22 +0.7
4,511,950 - LU632_RS23645 0.22 -2.2
4,511,950 - LU632_RS23645 0.22 -0.5
4,511,952 + LU632_RS23645 0.23 +1.7
4,511,952 + LU632_RS23645 0.23 +0.5
4,511,952 + LU632_RS23645 0.23 -0.2
4,511,953 - LU632_RS23645 0.23 -0.5
4,511,953 - LU632_RS23645 0.23 -0.3
4,511,953 - LU632_RS23645 0.23 -1.3
4,512,050 - LU632_RS23645 0.37 +0.7
4,512,074 - LU632_RS23645 0.41 +2.7
4,512,220 - LU632_RS23645 0.63 +1.5
4,512,232 - LU632_RS23645 0.64 -0.4
4,512,239 + LU632_RS23645 0.65 -0.4
4,512,240 - LU632_RS23645 0.66 +1.0
4,512,318 + LU632_RS23645 0.77 -1.2
4,512,319 - LU632_RS23645 0.77 +0.1
4,512,344 + LU632_RS23645 0.81 -1.5
4,512,344 + LU632_RS23645 0.81 +0.8
4,512,345 - LU632_RS23645 0.81 -0.7
4,512,345 - LU632_RS23645 0.81 -1.3
4,512,401 + LU632_RS23645 0.90 -0.2
4,512,401 + LU632_RS23645 0.90 -0.3
4,512,402 - LU632_RS23645 0.90 -2.6
4,512,403 + -1.3
4,512,403 + +0.8
4,512,403 + +0.1
4,512,403 + -0.6
4,512,403 + -1.3
4,512,404 - +0.7
4,512,422 + +0.1
4,512,523 + LU632_RS23650 0.22 +0.4
4,512,526 + LU632_RS23650 0.24 -0.6
4,512,526 + LU632_RS23650 0.24 +0.9
4,512,527 - LU632_RS23650 0.25 -0.8
4,512,657 + -0.6
4,512,699 - -1.1
4,512,785 - -0.4
4,512,852 + +0.8
4,512,853 - +1.4
4,512,876 + +0.1
4,512,897 + -0.2
4,512,914 + LU632_RS23655 0.14 -0.9
4,512,915 - LU632_RS23655 0.14 +1.7
4,512,915 - LU632_RS23655 0.14 -1.5
4,512,915 - LU632_RS23655 0.14 -0.6
4,512,934 + LU632_RS23655 0.20 +1.3
4,512,942 - LU632_RS23655 0.23 -1.1
4,512,986 + LU632_RS23655 0.39 -0.1
4,512,986 + LU632_RS23655 0.39 +0.8
4,512,987 - LU632_RS23655 0.39 -1.2
4,512,990 - LU632_RS23655 0.40 +2.6
4,513,076 + LU632_RS23655 0.70 -2.0
4,513,077 - LU632_RS23655 0.70 +1.4
4,513,084 + LU632_RS23655 0.73 -0.3
4,513,085 - LU632_RS23655 0.73 +2.0
4,513,089 - LU632_RS23655 0.74 -0.2
4,513,180 - -0.3
4,513,189 + LU632_RS23660 0.11 -0.9
4,513,189 + LU632_RS23660 0.11 +0.8
4,513,189 + LU632_RS23660 0.11 +2.4
4,513,189 + LU632_RS23660 0.11 -1.9
4,513,349 - LU632_RS23660 0.73 +1.7
4,513,424 - +3.0
4,513,446 + -0.8
4,513,447 - -0.6
4,513,459 + +1.3

Or see this region's nucleotide sequence