Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23255

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
4,427,740	-		LU632_RS23245	0.14	-2.8
4,427,752	-		LU632_RS23245	0.19	-1.2
4,427,752	-		LU632_RS23245	0.19	+1.3
4,427,759	+		LU632_RS23245	0.22	+3.6
4,427,763	-		LU632_RS23245	0.23	-0.6
4,427,783	+		LU632_RS23245	0.31	-0.3
4,427,783	+		LU632_RS23245	0.31	-0.1
4,427,784	-		LU632_RS23245	0.32	+0.9
4,427,859	+		LU632_RS23245	0.61	+1.2
4,427,903	+		LU632_RS23245	0.78	-0.9
4,427,903	+		LU632_RS23245	0.78	+0.3
4,427,923	+		LU632_RS23245	0.86	+1.1
4,427,949	+				+0.4
4,427,950	-				+1.1
4,427,950	-				+0.2
4,427,950	-				+1.0
4,427,952	+				+0.4
4,427,985	-				+0.3
4,428,066	-				+1.6
4,428,166	+				+0.0
4,428,177	+				+0.3
4,428,178	-				+0.2
4,428,245	+				-0.7
4,428,245	+				-0.7
4,428,245	+				-0.7
4,428,246	-				-0.7
4,428,246	-				+0.0
4,428,246	-				-2.6
4,428,246	-				+1.6
4,428,248	-				-2.1
4,428,319	+	soxS	LU632_RS23250	0.22	+0.8
4,428,354	-	soxS	LU632_RS23250	0.32	+0.3
4,428,432	+	soxS	LU632_RS23250	0.54	+1.6
4,428,432	+	soxS	LU632_RS23250	0.54	-0.7
4,428,433	-	soxS	LU632_RS23250	0.55	+0.6
4,428,434	+	soxS	LU632_RS23250	0.55	-2.1
4,428,434	+	soxS	LU632_RS23250	0.55	+2.4
4,428,434	+	soxS	LU632_RS23250	0.55	+1.0
4,428,478	+	soxS	LU632_RS23250	0.68	+3.4
4,428,588	+				+0.3
4,428,588	+				-1.2
4,428,588	+				+0.6
4,428,588	+				+1.5
4,428,588	+				+0.5
4,428,588	+				-1.8
4,428,588	+				+0.7
4,428,588	+				+7.4
4,428,588	+				-1.8
4,428,589	-				-0.8
4,428,589	-				-0.7
4,428,589	-				-3.1
4,428,589	-				+0.0
4,428,589	-				+1.0
4,428,679	+				+1.0
4,428,693	-				+0.0
4,428,702	+				+0.0
4,428,782	+	soxR	LU632_RS23255	0.11	-1.0
4,428,782	+	soxR	LU632_RS23255	0.11	+0.6
4,428,964	-	soxR	LU632_RS23255	0.52	-2.3
4,429,002	+	soxR	LU632_RS23255	0.60	-1.7
4,429,178	-				+2.5
4,429,187	+				+1.2
4,429,204	-				-1.2
4,429,204	-				-0.7
4,429,247	-				-1.6
4,429,362	-		LU632_RS23260	0.21	+0.6
4,429,644	-		LU632_RS23260	0.63	-1.2
4,429,644	-		LU632_RS23260	0.63	+0.4
4,429,741	-		LU632_RS23260	0.78	-1.4
4,429,802	-		LU632_RS23260	0.87	-0.3
4,429,802	-		LU632_RS23260	0.87	-2.5
4,429,859	-				-0.4
4,429,891	-				-0.7