Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21330

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
4,077,451	+		LU632_RS21320	0.89	+0.4
4,077,452	-		LU632_RS21320	0.89	+0.1
4,077,604	-				-1.5
4,077,650	-				+0.2
4,077,815	+				-1.7
4,077,816	-				-0.8
4,077,841	+				+1.1
4,077,841	+				+1.9
4,077,842	-				+0.8
4,077,842	-				-0.7
4,077,901	-	sspB	LU632_RS21325	0.15	+1.3
4,077,992	+	sspB	LU632_RS21325	0.34	+1.2
4,078,015	-	sspB	LU632_RS21325	0.38	+0.2
4,078,018	-	sspB	LU632_RS21325	0.39	+0.3
4,078,018	-	sspB	LU632_RS21325	0.39	-0.7
4,078,041	-	sspB	LU632_RS21325	0.43	-2.8
4,078,041	-	sspB	LU632_RS21325	0.43	-1.4
4,078,045	-	sspB	LU632_RS21325	0.44	+0.1
4,078,161	+	sspB	LU632_RS21325	0.68	+0.5
4,078,162	-	sspB	LU632_RS21325	0.68	+0.7
4,078,213	+	sspB	LU632_RS21325	0.78	-1.2
4,078,225	+	sspB	LU632_RS21325	0.81	-0.7
4,078,286	+				-3.0
4,079,180	+				-2.2
4,079,180	+				+0.3
4,079,181	-				-0.3
4,079,181	-				+0.3
4,079,181	-				+0.4
4,079,181	-				-0.9
4,079,181	-				-0.2
4,079,181	-				-0.5
4,079,181	-				+1.2
4,079,183	+				-0.0
4,079,192	-				+1.2