Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19615

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
3,719,399	+				-0.4
3,719,555	+				-3.6
3,719,630	+	argB	LU632_RS19610	0.16	-0.0
3,719,644	+	argB	LU632_RS19610	0.18	-1.6
3,719,646	-	argB	LU632_RS19610	0.18	-2.6
3,719,656	+	argB	LU632_RS19610	0.19	-4.0
3,719,892	-	argB	LU632_RS19610	0.50	-1.4
3,719,979	-	argB	LU632_RS19610	0.61	-2.2
3,720,028	+	argB	LU632_RS19610	0.67	-1.7
3,720,269	+				-0.4
3,720,269	+				-2.3
3,720,270	-				-3.7
3,720,270	-				-1.4
3,720,300	+				-2.0
3,720,337	+				-2.7
3,720,338	-				+0.6
3,720,340	+				-1.6
3,720,340	+				-0.4
3,720,341	-				-1.4
3,720,341	-				-3.4
3,720,486	+	argC	LU632_RS19615	0.19	-0.7
3,720,513	+	argC	LU632_RS19615	0.21	-2.0
3,720,513	+	argC	LU632_RS19615	0.21	-1.7
3,720,514	-	argC	LU632_RS19615	0.21	-2.3
3,720,536	+	argC	LU632_RS19615	0.24	-3.7
3,720,537	-	argC	LU632_RS19615	0.24	-1.9
3,720,553	+	argC	LU632_RS19615	0.25	-0.7
3,720,635	-	argC	LU632_RS19615	0.33	-1.9
3,720,635	-	argC	LU632_RS19615	0.33	-2.9
3,720,719	-	argC	LU632_RS19615	0.42	+1.6
3,720,719	-	argC	LU632_RS19615	0.42	+1.6
3,720,906	+	argC	LU632_RS19615	0.60	-2.0
3,720,951	+	argC	LU632_RS19615	0.65	-1.6
3,720,952	-	argC	LU632_RS19615	0.65	-3.8
3,720,954	+	argC	LU632_RS19615	0.65	-0.0
3,720,954	+	argC	LU632_RS19615	0.65	-3.2
3,720,955	-	argC	LU632_RS19615	0.65	-1.7
3,720,955	-	argC	LU632_RS19615	0.65	-4.1
3,720,955	-	argC	LU632_RS19615	0.65	-1.0
3,720,961	+	argC	LU632_RS19615	0.66	-0.0
3,721,007	+	argC	LU632_RS19615	0.70	-2.5
3,721,246	-				-0.4
3,721,319	-				-2.9
3,721,521	-				-2.2
3,721,854	-	argE	LU632_RS19620	0.31	+1.6
3,721,859	-	argE	LU632_RS19620	0.31	-0.0
3,721,886	+	argE	LU632_RS19620	0.34	-2.4
3,721,905	+	argE	LU632_RS19620	0.35	+0.6
3,721,906	-	argE	LU632_RS19620	0.36	-2.2
3,721,906	-	argE	LU632_RS19620	0.36	-2.0
3,721,906	-	argE	LU632_RS19620	0.36	+0.3
3,721,906	-	argE	LU632_RS19620	0.36	+0.4
3,722,146	+	argE	LU632_RS19620	0.56	-2.6
3,722,226	-	argE	LU632_RS19620	0.63	-0.7
3,722,274	+	argE	LU632_RS19620	0.67	+1.6
3,722,274	+	argE	LU632_RS19620	0.67	+1.9
3,722,274	+	argE	LU632_RS19620	0.67	-1.2
3,722,275	-	argE	LU632_RS19620	0.68	-2.0
3,722,275	-	argE	LU632_RS19620	0.68	-1.0
3,722,275	-	argE	LU632_RS19620	0.68	-1.9
3,722,275	-	argE	LU632_RS19620	0.68	+1.6