Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19605

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
3,717,317	-	argH	LU632_RS19600	0.37	-0.0
3,717,317	-	argH	LU632_RS19600	0.37	-0.0
3,717,317	-	argH	LU632_RS19600	0.37	-2.3
3,717,408	+	argH	LU632_RS19600	0.43	-3.2
3,717,628	-	argH	LU632_RS19600	0.59	-1.6
3,717,675	-	argH	LU632_RS19600	0.63	-1.2
3,717,729	-	argH	LU632_RS19600	0.67	-1.0
3,717,729	-	argH	LU632_RS19600	0.67	+1.6
3,717,785	-	argH	LU632_RS19600	0.71	-2.2
3,717,876	+	argH	LU632_RS19600	0.77	-0.9
3,717,880	+	argH	LU632_RS19600	0.78	+1.6
3,717,881	-	argH	LU632_RS19600	0.78	-2.7
3,717,930	-	argH	LU632_RS19600	0.81	-1.6
3,717,930	-	argH	LU632_RS19600	0.81	-1.6
3,717,930	-	argH	LU632_RS19600	0.81	-1.0
3,717,930	-	argH	LU632_RS19600	0.81	+0.6
3,717,990	+	argH	LU632_RS19600	0.86	-4.7
3,718,075	+				-1.7
3,718,075	+				-2.8
3,718,077	+				-3.1
3,718,078	-				-2.1
3,718,078	-				-2.4
3,718,078	-				-3.5
3,718,087	-				+0.6
3,718,215	+				-1.5
3,718,218	+				-1.0
3,718,225	-				-1.1
3,718,352	+				-0.0
3,718,402	-		LU632_RS19605	0.11	-2.3
3,718,535	+		LU632_RS19605	0.22	-0.2
3,718,536	-		LU632_RS19605	0.22	-2.5
3,718,544	+		LU632_RS19605	0.22	-0.4
3,718,544	+		LU632_RS19605	0.22	-2.6
3,718,545	-		LU632_RS19605	0.22	-1.2
3,718,545	-		LU632_RS19605	0.22	+0.6
3,718,545	-		LU632_RS19605	0.22	-2.9
3,718,545	-		LU632_RS19605	0.22	+1.6
3,719,079	-		LU632_RS19605	0.66	-0.4
3,719,196	+		LU632_RS19605	0.76	-0.0
3,719,213	+		LU632_RS19605	0.77	-1.3
3,719,214	-		LU632_RS19605	0.77	-4.6
3,719,218	-		LU632_RS19605	0.78	-2.4
3,719,226	-		LU632_RS19605	0.78	-2.1
3,719,258	+		LU632_RS19605	0.81	-2.5
3,719,399	+				-0.4
3,719,555	+				-3.6
3,719,630	+	argB	LU632_RS19610	0.16	-0.0
3,719,644	+	argB	LU632_RS19610	0.18	-1.6
3,719,646	-	argB	LU632_RS19610	0.18	-2.6
3,719,656	+	argB	LU632_RS19610	0.19	-4.0
3,719,892	-	argB	LU632_RS19610	0.50	-1.4
3,719,979	-	argB	LU632_RS19610	0.61	-2.2
3,720,028	+	argB	LU632_RS19610	0.67	-1.7
3,720,269	+				-0.4
3,720,269	+				-2.3
3,720,270	-				-3.7
3,720,270	-				-1.4
3,720,300	+				-2.0
3,720,337	+				-2.7
3,720,338	-				+0.6
3,720,340	+				-1.6
3,720,340	+				-0.4
3,720,341	-				-1.4
3,720,341	-				-3.4
3,720,486	+	argC	LU632_RS19615	0.19	-0.7