Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19210

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
3,633,450	-				-0.8
3,633,503	+				+1.6
3,633,631	-				-1.3
3,633,786	+				+0.6
3,633,789	+				+1.1
3,633,832	+				-3.3
3,633,859	+				-0.3
3,633,859	+				-1.3
3,633,859	+				+1.9
3,633,894	+				+1.1
3,633,956	+				-0.1
3,633,957	-				-0.8
3,634,015	-		LU632_RS19205	0.24	-1.5
3,634,069	-		LU632_RS19205	0.42	-3.3
3,634,098	+		LU632_RS19205	0.51	+0.4
3,634,099	-		LU632_RS19205	0.51	-3.2
3,634,136	+		LU632_RS19205	0.64	+0.5
3,634,136	+		LU632_RS19205	0.64	-1.6
3,634,143	+		LU632_RS19205	0.66	+0.8
3,634,300	+				-1.6
3,634,301	-				+0.5
3,634,358	+				+1.1
3,634,373	+				-1.1
3,634,439	+				+1.8
3,634,440	-				+0.7
3,634,440	-				+1.3
3,634,443	+				-1.8
3,634,444	-				+0.5
3,634,549	+	ugpQ	LU632_RS19210	0.16	-0.6
3,634,611	-	ugpQ	LU632_RS19210	0.24	+0.5
3,634,841	+	ugpQ	LU632_RS19210	0.54	-0.1
3,634,842	-	ugpQ	LU632_RS19210	0.54	-2.1
3,634,842	-	ugpQ	LU632_RS19210	0.54	+2.8
3,635,081	+	ugpQ	LU632_RS19210	0.85	+0.3
3,635,082	-	ugpQ	LU632_RS19210	0.86	+2.1
3,635,082	-	ugpQ	LU632_RS19210	0.86	-1.6
3,635,305	-		LU632_RS19215	0.35	+0.5
3,635,305	-		LU632_RS19215	0.35	-0.6
3,635,388	+		LU632_RS19215	0.59	-0.9
3,635,389	-		LU632_RS19215	0.59	+1.6
3,635,389	-		LU632_RS19215	0.59	-1.4
3,635,389	-		LU632_RS19215	0.59	+1.1
3,635,389	-		LU632_RS19215	0.59	+2.5
3,635,406	+		LU632_RS19215	0.64	-1.2
3,635,406	+		LU632_RS19215	0.64	+3.0
3,635,406	+		LU632_RS19215	0.64	-0.8
3,635,407	-		LU632_RS19215	0.65	-2.1
3,635,407	-		LU632_RS19215	0.65	+1.5
3,635,407	-		LU632_RS19215	0.65	-2.9
3,635,410	-		LU632_RS19215	0.65	-0.8
3,635,614	+				+0.7
3,635,614	+				-1.5
3,635,619	-				+0.9
3,635,619	-				+0.5
3,635,620	+				+0.1
3,635,620	+				-1.5
3,635,626	+				-0.6
3,635,653	+				+1.0
3,635,676	+				-1.6
3,635,688	+				+1.5
3,635,688	+				-0.8
3,635,688	+				+0.2
3,635,688	+				+0.5
3,635,688	+				-1.9
3,635,688	+				-1.0
3,635,688	+				-0.6
3,635,689	-				+0.2
3,635,689	-				+1.9
3,635,691	-				-0.3
3,635,722	+				-0.0
3,635,722	+				-1.5
3,635,765	+				+1.4
3,635,765	+				+0.5
3,635,766	-				+1.6
3,635,805	-				-0.2
3,635,831	-				-1.5
3,635,837	+				-2.2
3,635,837	+				-0.1
3,635,838	-				-0.4
3,635,838	-				+1.6
3,635,838	-				+0.9
3,635,853	-		LU632_RS19220	0.12	+1.5
3,635,853	-		LU632_RS19220	0.12	+1.5
3,635,854	+		LU632_RS19220	0.12	-1.3
3,635,854	+		LU632_RS19220	0.12	-0.5
3,635,854	+		LU632_RS19220	0.12	-0.0
3,635,854	+		LU632_RS19220	0.12	+0.8
3,635,854	+		LU632_RS19220	0.12	-0.0
3,635,855	-		LU632_RS19220	0.13	-0.3
3,635,855	-		LU632_RS19220	0.13	+0.2
3,635,855	-		LU632_RS19220	0.13	+0.4
3,635,855	-		LU632_RS19220	0.13	+1.3
3,635,855	-		LU632_RS19220	0.13	+1.3
3,635,855	-		LU632_RS19220	0.13	+3.0
3,635,937	+		LU632_RS19220	0.35	-0.4
3,635,938	-		LU632_RS19220	0.35	-2.2
3,635,947	-		LU632_RS19220	0.37	-2.0
3,636,000	-		LU632_RS19220	0.52	+1.9
3,636,032	+		LU632_RS19220	0.60	+9.1
3,636,032	+		LU632_RS19220	0.60	+4.8
3,636,036	+		LU632_RS19220	0.61	-2.2
3,636,049	+		LU632_RS19220	0.65	+2.0