Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19065

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
3,597,556	+		LU632_RS19055	0.10	+3.2
3,597,557	-		LU632_RS19055	0.10	+0.6
3,597,735	+		LU632_RS19055	0.37	+4.4
3,597,736	-		LU632_RS19055	0.37	+0.7
3,597,736	-		LU632_RS19055	0.37	+0.7
3,598,104	+				+0.2
3,598,105	+				+1.5
3,598,105	+				+0.3
3,598,106	-				-1.3
3,598,291	+		LU632_RS19060	0.34	-2.4
3,598,292	-		LU632_RS19060	0.35	+2.8
3,598,304	+		LU632_RS19060	0.41	+1.9
3,598,305	-		LU632_RS19060	0.42	+1.4
3,598,337	+		LU632_RS19060	0.58	-2.5
3,598,448	-				-1.4
3,598,466	-				+0.5
3,598,466	-				-1.1
3,598,503	-				-0.2
3,598,508	-				+0.9
3,598,573	+		LU632_RS19065	0.17	+0.2
3,598,615	-		LU632_RS19065	0.29	-0.9
3,598,704	-		LU632_RS19065	0.54	-0.7
3,598,704	-		LU632_RS19065	0.54	-0.9
3,598,717	+		LU632_RS19065	0.57	+1.6
3,598,739	-		LU632_RS19065	0.63	+1.1
3,598,739	-		LU632_RS19065	0.63	-2.0
3,598,749	+		LU632_RS19065	0.66	-0.6
3,598,777	+		LU632_RS19065	0.74	-2.3
3,598,778	-		LU632_RS19065	0.74	+1.0
3,598,847	+				-0.3
3,598,848	-				-3.0
3,598,848	-				-0.1
3,598,848	-				+0.1
3,598,848	-				+0.0
3,598,887	+				-0.8
3,598,888	-				+0.5
3,598,893	+				+1.3
3,598,894	-				-1.0
3,598,973	-				+0.9
3,599,027	-				-2.0
3,599,029	+				+3.9
3,599,030	-				-1.0
3,599,030	-				+0.7
3,599,030	-				+2.4
3,599,033	-				-0.8
3,599,033	-				-1.8
3,599,094	+				-0.5
3,599,109	+				+0.5
3,599,111	+				-2.7
3,599,114	-				-0.0
3,599,131	-				-0.7
3,599,165	+				-0.0
3,599,307	-				-0.3
3,599,350	-				+0.1
3,599,350	-				+0.4
3,599,350	-				-0.5
3,599,416	-				+2.9
3,599,435	-				+0.8
3,599,435	-				-1.3
3,599,438	+				+0.7
3,599,484	-				-1.6
3,599,484	-				-0.8