Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19015

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
3,589,836	+		LU632_RS19005	0.81	-2.0
3,589,837	-		LU632_RS19005	0.81	-1.9
3,589,840	-		LU632_RS19005	0.81	-0.0
3,589,876	+		LU632_RS19005	0.82	+0.6
3,589,934	+		LU632_RS19005	0.84	-2.0
3,590,011	+		LU632_RS19005	0.86	+1.5
3,590,012	-		LU632_RS19005	0.86	+2.1
3,590,012	-		LU632_RS19005	0.86	-0.2
3,590,012	-		LU632_RS19005	0.86	+1.5
3,590,138	+				+1.3
3,590,145	+				-3.0
3,590,146	-				+0.2
3,590,146	-				+0.0
3,590,244	+				+1.8
3,590,330	+				-0.0
3,590,331	-				-1.5
3,590,390	+				+0.0
3,590,430	+				+0.5
3,590,478	-				+0.4
3,590,499	+				-2.5
3,590,500	-				+0.1
3,590,616	+		LU632_RS19010	0.48	-0.5
3,590,627	-		LU632_RS19010	0.53	-1.8
3,590,670	+		LU632_RS19010	0.73	-2.9
3,590,728	-				+0.0
3,590,798	+				+5.1
3,590,983	+	cspA	LU632_RS19015	0.87	-2.7
3,590,984	-	cspA	LU632_RS19015	0.88	-1.5
3,591,030	-				-1.7
3,591,074	-				+0.2
3,591,085	-				-1.3
3,591,119	-				-1.3
3,591,160	-				+2.0
3,591,212	+				-0.0
3,591,212	+				+0.8
3,591,225	+				+1.7
3,591,242	-				+0.0
3,591,248	+				-0.4
3,591,257	-				+0.5
3,591,257	-				-0.5
3,591,269	-				-1.9
3,591,295	+				+2.6
3,591,295	+				-1.3
3,591,296	-				+1.1
3,591,345	+				-1.5
3,591,345	-				-1.5
3,591,440	+		LU632_RS19020	0.15	+1.1
3,591,440	+		LU632_RS19020	0.15	+1.0
3,591,447	+		LU632_RS19020	0.16	+2.3
3,591,448	-		LU632_RS19020	0.16	+2.2
3,591,516	+		LU632_RS19020	0.26	-2.5
3,591,656	+		LU632_RS19020	0.47	-0.5
3,591,656	+		LU632_RS19020	0.47	-1.9
3,591,656	+		LU632_RS19020	0.47	+1.5
3,591,656	+		LU632_RS19020	0.47	-0.5
3,591,656	+		LU632_RS19020	0.47	-0.9
3,591,657	-		LU632_RS19020	0.47	+1.0
3,591,782	+		LU632_RS19020	0.66	-0.8
3,591,962	+				+1.8
3,591,963	-				-0.3