Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17570

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
3,299,129	+		LU632_RS17565	0.50	+0.7
3,299,130	-		LU632_RS17565	0.50	-1.7
3,299,148	-		LU632_RS17565	0.51	-1.3
3,299,163	-		LU632_RS17565	0.52	+0.5
3,299,163	-		LU632_RS17565	0.52	-1.0
3,299,262	+		LU632_RS17565	0.57	+1.7
3,299,262	+		LU632_RS17565	0.57	+0.3
3,299,263	-		LU632_RS17565	0.57	-1.5
3,299,402	+		LU632_RS17565	0.65	+0.1
3,299,402	+		LU632_RS17565	0.65	+0.8
3,299,402	+		LU632_RS17565	0.65	+0.5
3,299,402	+		LU632_RS17565	0.65	-2.0
3,299,403	-		LU632_RS17565	0.65	-1.4
3,299,429	+		LU632_RS17565	0.67	-0.9
3,299,430	-		LU632_RS17565	0.67	-1.4
3,299,430	-		LU632_RS17565	0.67	-0.3
3,299,500	+		LU632_RS17565	0.71	-1.6
3,299,579	+		LU632_RS17565	0.75	-0.4
3,299,580	-		LU632_RS17565	0.75	-0.9
3,299,609	+		LU632_RS17565	0.77	-3.1
3,299,609	+		LU632_RS17565	0.77	+1.0
3,299,634	+		LU632_RS17565	0.78	-1.4
3,299,736	+		LU632_RS17565	0.84	-0.2
3,299,736	+		LU632_RS17565	0.84	-3.8
3,299,737	-		LU632_RS17565	0.84	-0.3
3,299,739	-		LU632_RS17565	0.84	+0.4
3,299,739	-		LU632_RS17565	0.84	+1.4
3,299,741	+		LU632_RS17565	0.84	+0.2
3,299,741	+		LU632_RS17565	0.84	-0.4
3,299,742	-		LU632_RS17565	0.84	+0.2
3,299,742	-		LU632_RS17565	0.84	-2.4
3,299,742	-		LU632_RS17565	0.84	-0.2
3,299,751	+		LU632_RS17565	0.84	-0.4
3,299,751	+		LU632_RS17565	0.84	+0.3
3,299,752	-		LU632_RS17565	0.84	+1.0
3,299,752	-		LU632_RS17565	0.84	-0.2
3,299,822	+		LU632_RS17565	0.88	-1.5
3,299,822	+		LU632_RS17565	0.88	+0.2
3,299,880	+				-1.6
3,299,881	-				-0.1
3,299,881	-				-0.2
3,299,881	-				-0.9
3,299,881	-				+0.4
3,299,881	-				+2.2
3,299,881	-				-1.1
3,299,899	-				+0.7
3,299,901	-				-1.7
3,299,930	+				+2.0
3,299,930	+				+0.0
3,299,930	+				-0.7
3,299,931	-				+0.4
3,299,951	-				+1.4
3,299,979	-				+1.4
3,299,988	+				-0.2
3,299,989	-				-0.6
3,300,000	-				-1.6
3,300,054	-				-1.4
3,300,072	+				-2.8
3,300,079	+				-2.4
3,300,103	+				+0.1
3,300,110	-				-0.9
3,300,119	-				-2.8
3,300,168	+		LU632_RS17570	0.11	-0.1
3,300,232	+		LU632_RS17570	0.17	+0.0
3,300,233	-		LU632_RS17570	0.17	-2.7
3,300,369	-		LU632_RS17570	0.30	-1.0
3,300,478	+		LU632_RS17570	0.40	+0.7
3,300,478	+		LU632_RS17570	0.40	-3.0
3,300,519	+		LU632_RS17570	0.43	+0.1
3,300,541	+		LU632_RS17570	0.45	-2.1
3,300,542	-		LU632_RS17570	0.45	-1.2
3,300,542	-		LU632_RS17570	0.45	-3.0
3,300,562	+		LU632_RS17570	0.47	+2.3
3,300,615	+		LU632_RS17570	0.52	-0.2
3,300,816	-		LU632_RS17570	0.71	+2.3
3,300,859	-		LU632_RS17570	0.74	-1.8
3,300,874	-		LU632_RS17570	0.76	-0.1
3,300,961	-		LU632_RS17570	0.84	-0.2
3,301,043	+				+1.0
3,301,045	+				+1.5
3,301,046	-				-1.5
3,301,046	-				-1.3
3,301,046	-				-0.3
3,301,088	-				+1.4
3,301,090	+				+0.4
3,301,090	+				-1.1
3,301,090	+				-1.7
3,301,091	-				-0.1
3,301,094	+				+0.0
3,301,094	+				-1.2
3,301,094	+				-0.5
3,301,095	-				-0.6
3,301,096	+				-0.6
3,301,218	-				-1.2
3,301,244	+		LU632_RS17575	0.11	+0.3
3,301,276	+		LU632_RS17575	0.14	-1.6
3,301,277	-		LU632_RS17575	0.14	-1.1
3,301,306	-		LU632_RS17575	0.17	-0.9
3,301,308	+		LU632_RS17575	0.17	+1.4
3,301,309	-		LU632_RS17575	0.17	+2.6
3,301,309	-		LU632_RS17575	0.17	-0.2
3,301,313	-		LU632_RS17575	0.18	-0.2
3,301,384	-		LU632_RS17575	0.24	-1.9
3,301,384	-		LU632_RS17575	0.24	-1.2
3,301,384	-		LU632_RS17575	0.24	-1.9
3,301,440	+		LU632_RS17575	0.30	-0.9
3,301,441	-		LU632_RS17575	0.30	-3.2
3,301,446	+		LU632_RS17575	0.31	+0.6
3,301,447	-		LU632_RS17575	0.31	-1.4
3,301,549	-		LU632_RS17575	0.41	-0.9
3,301,549	-		LU632_RS17575	0.41	+0.5
3,301,826	-		LU632_RS17575	0.68	+0.5
3,301,870	-		LU632_RS17575	0.72	-2.1
3,301,915	+		LU632_RS17575	0.77	-2.7
3,301,941	+		LU632_RS17575	0.79	-0.0
3,301,942	-		LU632_RS17575	0.79	+0.0
3,301,942	-		LU632_RS17575	0.79	-1.6
3,301,945	-		LU632_RS17575	0.80	-2.1
3,301,945	-		LU632_RS17575	0.80	+1.1
3,301,947	+		LU632_RS17575	0.80	+0.3
3,301,947	+		LU632_RS17575	0.80	-1.5
3,301,948	-		LU632_RS17575	0.80	-1.6
3,301,948	-		LU632_RS17575	0.80	-0.2
3,301,948	-		LU632_RS17575	0.80	-2.1
3,302,013	-		LU632_RS17575	0.86	-0.6
3,302,013	-		LU632_RS17575	0.86	-0.1
3,302,013	-		LU632_RS17575	0.86	-0.9
3,302,013	-		LU632_RS17575	0.86	+0.6
3,302,019	-		LU632_RS17575	0.87	+2.1
3,302,032	-		LU632_RS17575	0.88	-0.2
3,302,076	-				-1.2