Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16635

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
3,142,742	-				+0.9
3,142,764	-				-0.0
3,142,771	+				+0.5
3,142,771	+				-0.1
3,142,771	+				+1.5
3,142,772	-				+0.4
3,142,772	-				+0.3
3,143,229	-				-0.7
3,143,232	+				-0.5
3,143,306	-		LU632_RS16630	0.15	-0.1
3,143,308	+		LU632_RS16630	0.15	-1.7
3,143,308	+		LU632_RS16630	0.15	-1.8
3,143,380	+		LU632_RS16630	0.33	+0.4
3,143,380	+		LU632_RS16630	0.33	+0.4
3,143,380	+		LU632_RS16630	0.33	-0.4
3,143,380	+		LU632_RS16630	0.33	-0.6
3,143,381	-		LU632_RS16630	0.33	+2.3
3,143,557	+		LU632_RS16630	0.76	-3.6
3,143,630	-				+0.9
3,143,635	+				-2.4
3,143,688	+				+0.3
3,143,689	-				-0.7
3,143,721	+				+0.3
3,143,721	+				+1.3
3,143,722	-				-1.8
3,143,722	-				-0.2
3,143,733	-				-0.3
3,143,783	+				-1.5
3,143,783	+				-2.4
3,143,811	+		LU632_RS16635	0.13	+0.2
3,143,813	+		LU632_RS16635	0.13	-0.7
3,143,813	+		LU632_RS16635	0.13	-0.2
3,143,813	+		LU632_RS16635	0.13	-0.8
3,143,813	+		LU632_RS16635	0.13	-0.7
3,143,819	+		LU632_RS16635	0.13	+0.3
3,143,880	+		LU632_RS16635	0.20	-1.1
3,143,907	+		LU632_RS16635	0.23	+1.1
3,143,907	+		LU632_RS16635	0.23	-0.5
3,143,908	-		LU632_RS16635	0.23	-0.0
3,143,908	-		LU632_RS16635	0.23	-1.4
3,143,913	+		LU632_RS16635	0.24	-0.1
3,143,925	-		LU632_RS16635	0.25	-2.6
3,143,958	-		LU632_RS16635	0.28	-1.1
3,143,958	-		LU632_RS16635	0.28	+1.0
3,144,011	+		LU632_RS16635	0.34	-0.5
3,144,112	-		LU632_RS16635	0.45	+0.2
3,144,192	+		LU632_RS16635	0.54	+1.1
3,144,314	+		LU632_RS16635	0.67	+4.3
3,144,374	-		LU632_RS16635	0.73	+0.9
3,144,528	+				+0.6
3,144,529	-				-0.7
3,144,572	+				-2.4
3,145,405	+				-1.5
3,145,483	+				-2.0
3,145,526	+		LU632_RS16645	0.12	-2.2
3,145,527	-		LU632_RS16645	0.12	+1.4
3,145,617	+		LU632_RS16645	0.37	-0.7