Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15835

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
2,993,695	+				-1.0
2,993,695	+				+0.0
2,993,696	-				-2.5
2,993,696	-				+0.2
2,993,696	-				-0.0
2,993,716	+				-1.5
2,993,716	+				+1.9
2,993,717	-				+2.0
2,993,717	-				-0.3
2,993,717	-				+2.8
2,993,791	+				-2.1
2,993,815	-				-2.1
2,993,844	+				-3.1
2,993,852	+				-1.7
2,993,865	+				+0.1
2,993,865	+				-2.2
2,994,032	+				+0.1
2,994,045	+				-1.3
2,994,045	+				+0.9
2,994,132	+				-1.2
2,994,132	+				-2.3
2,994,132	+				+0.9
2,994,133	-				+0.4
2,994,313	+				+0.4
2,994,313	+				+2.1
2,994,314	-				-1.9
2,994,314	-				-0.3
2,994,314	-				-1.3
2,994,314	-				+0.4
2,994,315	+				-3.0
2,994,315	+				+0.1
2,994,316	-				-1.0
2,994,316	-				-1.9
2,994,316	-				+1.5
2,994,408	-		LU632_RS15830	0.57	+0.7
2,994,442	+		LU632_RS15830	0.79	-0.1
2,994,476	-				+0.1
2,994,476	-				-3.1
2,994,500	-				-0.7
2,994,520	-				+3.0
2,994,531	+				+0.3
2,994,532	-				-0.5
2,994,549	+				+0.3
2,994,549	+				+1.3
2,994,627	+				-0.5
2,994,774	+				+1.9
2,994,800	+	sbcB	LU632_RS15835	0.12	+1.3
2,994,839	-	sbcB	LU632_RS15835	0.14	-0.4
2,994,839	-	sbcB	LU632_RS15835	0.14	-0.8
2,994,892	+	sbcB	LU632_RS15835	0.18	-2.3
2,994,937	+	sbcB	LU632_RS15835	0.21	+0.7
2,995,297	+	sbcB	LU632_RS15835	0.46	+0.7
2,995,325	-	sbcB	LU632_RS15835	0.48	-1.7
2,995,344	+	sbcB	LU632_RS15835	0.50	-0.0
2,995,344	+	sbcB	LU632_RS15835	0.50	-0.5
2,995,345	-	sbcB	LU632_RS15835	0.50	+0.2
2,995,397	-	sbcB	LU632_RS15835	0.53	-2.2
2,995,432	+	sbcB	LU632_RS15835	0.56	-0.2
2,995,639	-	sbcB	LU632_RS15835	0.70	+0.6
2,995,681	-	sbcB	LU632_RS15835	0.73	-1.3
2,995,714	+	sbcB	LU632_RS15835	0.76	+0.3
2,995,774	+	sbcB	LU632_RS15835	0.80	+1.9
2,995,775	-	sbcB	LU632_RS15835	0.80	-0.8
2,995,775	-	sbcB	LU632_RS15835	0.80	+0.3
2,995,870	+	sbcB	LU632_RS15835	0.86	-1.0
2,995,958	+				-0.6
2,995,991	+				+0.1
2,996,013	+				-0.3
2,996,013	+				-2.2
2,996,014	-				-1.4
2,996,031	+				-1.4
2,996,067	-				+0.7
2,996,219	-				-1.2
2,996,219	-				-0.3
2,996,219	-				-1.3
2,996,221	-				-2.7
2,996,221	-				-0.3
2,996,873	+				-0.0
2,996,873	+				+0.0