Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15800

Experiment: Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)
2,988,537	+		LU632_RS15790	0.50	+0.5
2,988,538	-		LU632_RS15790	0.50	+0.7
2,988,538	-		LU632_RS15790	0.50	-0.9
2,988,575	+		LU632_RS15790	0.55	-0.1
2,988,605	+		LU632_RS15790	0.59	+1.4
2,988,656	+		LU632_RS15790	0.65	+0.4
2,988,656	+		LU632_RS15790	0.65	+0.2
2,988,657	-		LU632_RS15790	0.65	-1.9
2,988,754	+		LU632_RS15790	0.78	+3.3
2,988,755	-		LU632_RS15790	0.78	+1.3
2,988,850	+				-0.6
2,988,850	+				-1.2
2,988,851	-				+0.3
2,988,908	+				-0.3
2,988,909	-				-1.7
2,988,911	-				+1.0
2,988,911	-				-0.7
2,988,911	-				-1.9
2,988,931	-				-0.5
2,989,152	+		LU632_RS15795	0.43	-0.8
2,989,152	+		LU632_RS15795	0.43	+0.9
2,989,168	+		LU632_RS15795	0.46	-1.1
2,989,168	+		LU632_RS15795	0.46	-2.1
2,989,168	+		LU632_RS15795	0.46	-0.4
2,989,169	-		LU632_RS15795	0.46	-0.9
2,989,170	+		LU632_RS15795	0.46	+1.4
2,989,170	+		LU632_RS15795	0.46	+2.0
2,989,170	+		LU632_RS15795	0.46	+0.2
2,989,170	+		LU632_RS15795	0.46	-2.4
2,989,170	+		LU632_RS15795	0.46	+0.3
2,989,170	+		LU632_RS15795	0.46	-0.8
2,989,170	+		LU632_RS15795	0.46	+0.6
2,989,170	+		LU632_RS15795	0.46	-0.1
2,989,170	+		LU632_RS15795	0.46	+0.6
2,989,170	+		LU632_RS15795	0.46	-2.4
2,989,171	-		LU632_RS15795	0.47	-0.3
2,989,171	-		LU632_RS15795	0.47	+5.3
2,989,171	-		LU632_RS15795	0.47	+0.1
2,989,171	-		LU632_RS15795	0.47	-0.3
2,989,171	-		LU632_RS15795	0.47	+0.3
2,989,171	-		LU632_RS15795	0.47	+0.9
2,989,171	-		LU632_RS15795	0.47	+0.9
2,989,273	+		LU632_RS15795	0.66	+0.5
2,989,274	-		LU632_RS15795	0.66	-1.2
2,989,274	-		LU632_RS15795	0.66	+0.3
2,989,275	+		LU632_RS15795	0.67	+1.7
2,989,276	-		LU632_RS15795	0.67	+0.7
2,989,276	-		LU632_RS15795	0.67	+1.3
2,989,318	-		LU632_RS15795	0.75	+1.7
2,989,389	-		LU632_RS15795	0.89	-0.3
2,989,455	+				+1.1
2,989,456	-				-2.6
2,989,456	-				-0.8
2,989,459	+				+0.6
2,989,459	+				-2.1
2,989,460	-				-2.1
2,989,460	-				-1.9
2,989,483	+				+1.8
2,989,484	-				+2.3
2,989,503	-				-0.1
2,989,554	-		LU632_RS15800	0.26	-1.7
2,989,559	+		LU632_RS15800	0.33	-1.1
2,989,560	-		LU632_RS15800	0.35	-1.9
2,989,560	-		LU632_RS15800	0.35	-3.3
2,989,668	-				-2.2
2,989,668	-				+1.3
2,989,733	+				-1.7
2,989,915	+		LU632_RS15805	0.53	+2.7
2,989,947	+		LU632_RS15805	0.61	+1.3
2,990,016	-		LU632_RS15805	0.78	-0.7
2,990,019	-		LU632_RS15805	0.79	+0.3
2,990,019	-		LU632_RS15805	0.79	+1.7
2,990,117	+				-2.8
2,990,123	+				-1.1
2,990,124	-				+1.3
2,990,494	-				+0.1
2,990,512	-				-1.9
2,990,512	-				-1.7
2,990,512	-				-1.7
2,990,514	+				-0.6
2,990,548	+				-0.2
2,990,548	+				-0.7
2,990,548	+				-0.7
2,990,569	+		LU632_RS15815	0.10	+0.4
2,990,569	+		LU632_RS15815	0.10	-1.1
2,990,570	-		LU632_RS15815	0.10	-0.2
2,990,570	-		LU632_RS15815	0.10	+1.3
2,990,599	+		LU632_RS15815	0.16	-1.3